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stephenslab / susieR

R package for "sum of single effects" regression.
https://stephenslab.github.io/susieR
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Is it recommended to partition SNPs into independent regions before fine-mapping or is SuSie Taking care of that? #213

Closed garyzhubc closed 6 months ago

garyzhubc commented 6 months ago

Is it recommended to partition SNPs into independent regions before fine-mapping or is SuSie Taking care of that?

gaow commented 6 months ago

You can include as many SNPs in the analysis as it computationally makes sense (on your machine). But if the regions are too large, it would help computationally to input independent regions.