How to get Fig 3 from Susie (as a frequentist procedure)?

stephenslab / susieR

R package for "sum of single effects" regression.

https://stephenslab.github.io/susieR

Other

176 stars 46 forks source link

How to get Fig 3 from Susie (as a frequentist procedure)? #232

Closed garyzhubc closed 2 months ago

garyzhubc commented 3 months ago

I'd like to reproduce the coverage, power, median size, and average squared correlation in Fig 3. What option should I use? What is the null hypothesis? Is it the same as "null simulations"? What is the test statistic?

pcarbo commented 3 months ago

@garyzhubc Please take a look at this github repository which contains the code used to generate the results in the SuSiE paper. See for example this analysis.