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stephensolis / kameris

A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks
MIT License
14 stars 4 forks source link

Fails to run on AMD processors #1

Open ArtPoon opened 5 years ago

ArtPoon commented 5 years ago

Trying to run Kameris 1.2.3 on an AMD Ryzen Threadripper-based system running Ubuntu 18.04.1

ERROR    an unexpected error occurred: CalledProcessError: Command '"/home/art/.local/lib/python2.7/site-packages/kameris/scripts/generation_cgr_linux_avx2" cgr "tests" "/tmp/tmpnWBYZH/cgrs.mm-repr" 6 16' returned non-zero exit status 1
ERROR    ***if you believe this is a bug, please report it at https://github.com/stephensolis/kameris/issues and include ALL the following text:***
Traceback (most recent call last):
  File "/home/art/.local/lib/python2.7/site-packages/kameris/__main__.py", line 41, in main
    run_module.run(args)
  File "/home/art/.local/lib/python2.7/site-packages/kameris/subcommands/classify.py", line 48, in run
    backend.run_backend_kmers(options, {})
  File "/home/art/.local/lib/python2.7/site-packages/kameris/job_steps/backend.py", line 40, in run_backend_kmers
    }, {})
  File "/home/art/.local/lib/python2.7/site-packages/kameris/job_steps/_command.py", line 22, in run_command_step
    run_command_logged(options['command'], shell=True)
  File "/home/art/.local/lib/python2.7/site-packages/kameris/job_steps/_command.py", line 18, in run_command_logged
    raise subprocess.CalledProcessError(process.returncode, command, None)
CalledProcessError: Command '"/home/art/.local/lib/python2.7/site-packages/kameris/scripts/generation_cgr_linux_avx2" cgr "tests" "/tmp/tmpnWBYZH/cgrs.mm-repr" 6 16' returned non-zero exit status 1