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stephensolis / kameris

A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks
MIT License
14 stars 4 forks source link

failing in installing kameris on mac with pip3 #3

Closed mavino closed 5 years ago

mavino commented 5 years ago 
sudo pip3 install kameris
The directory '/Users/Lab/Library/Caches/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
The directory '/Users/Lab/Library/Caches/pip' or its parent directory is not owned by the current user and caching wheels has been disabled. check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
Collecting kameris
  Downloading https://files.pythonhosted.org/packages/64/c8/c76e89ecdf3ba96557d33bf896438242634aaf0cc09c348da10a528089a6/kameris-1.2.3-py2.py3-none-macosx_10_6_intel.whl (416kB)
    100% |████████████████████████████████| 419kB 3.9MB/s 
Requirement already satisfied: numpy in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (1.15.4)
Requirement already satisfied: jsonschema in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (2.6.0)
Requirement already satisfied: watchtower in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (0.5.4)
Requirement already satisfied: backports.tempfile in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (1.0)
Requirement already satisfied: ruamel.yaml in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (0.15.81)
Requirement already satisfied: stopit in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (1.1.2)
Requirement already satisfied: x86cpu in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (0.4)
Requirement already satisfied: appdirs in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (1.4.3)
Requirement already satisfied: tqdm in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (4.28.1)
Requirement already satisfied: kameris-formats in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (1.0.5)
Requirement already satisfied: requests>=2.18.0 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (2.21.0)
Requirement already satisfied: six in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (1.12.0)
Requirement already satisfied: psutil in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (5.4.8)
Requirement already satisfied: tabulate in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (0.8.2)
Collecting scikit-learn==0.19.1 (from kameris)
  Downloading https://files.pythonhosted.org/packages/f5/2c/5edf2488897cad4fb8c4ace86369833552615bf264460ae4ef6e1f258982/scikit-learn-0.19.1.tar.gz (9.5MB)
    100% |████████████████████████████████| 9.5MB 5.7MB/s 
Requirement already satisfied: scipy in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from kameris) (1.2.0)
Requirement already satisfied: boto3>=1.3.0 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from watchtower->kameris) (1.9.65)
Requirement already satisfied: backports.weakref in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from backports.tempfile->kameris) (1.0.post1)
Requirement already satisfied: urllib3<1.25,>=1.21.1 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from requests>=2.18.0->kameris) (1.24.1)
Requirement already satisfied: certifi>=2017.4.17 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from requests>=2.18.0->kameris) (2018.11.29)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from requests>=2.18.0->kameris) (3.0.4)
Requirement already satisfied: idna<2.9,>=2.5 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from requests>=2.18.0->kameris) (2.8)
Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from boto3>=1.3.0->watchtower->kameris) (0.9.3)
Requirement already satisfied: s3transfer<0.2.0,>=0.1.10 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from boto3>=1.3.0->watchtower->kameris) (0.1.13)
Requirement already satisfied: botocore<1.13.0,>=1.12.65 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from boto3>=1.3.0->watchtower->kameris) (1.12.65)
Requirement already satisfied: python-dateutil<3.0.0,>=2.1; python_version >= "2.7" in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from botocore<1.13.0,>=1.12.65->boto3>=1.3.0->watchtower->kameris) (2.7.5)
Requirement already satisfied: docutils>=0.10 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from botocore<1.13.0,>=1.12.65->boto3>=1.3.0->watchtower->kameris) (0.14)
Installing collected packages: scikit-learn, kameris
  Found existing installation: scikit-learn 0.21.dev0
    Uninstalling scikit-learn-0.21.dev0:
      Successfully uninstalled scikit-learn-0.21.dev0
  Running setup.py install for scikit-learn ... error
    Complete output from command /Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7 -u -c "import setuptools, tokenize;__file__='/private/tmp/pip-install-fgkn1ouj/scikit-learn/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/tmp/pip-record-zmv6r6kz/install-record.txt --single-version-externally-managed --compile:
    Partial import of sklearn during the build process.
    blas_opt_info:
    blas_mkl_info:
    customize UnixCCompiler
      libraries mkl_rt not found in ['/Library/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE

    blis_info:
    customize UnixCCompiler
      libraries blis not found in ['/Library/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE

    openblas_info:
    customize UnixCCompiler
    customize UnixCCompiler
      libraries openblas not found in ['/Library/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE

    atlas_3_10_blas_threads_info:
    Setting PTATLAS=ATLAS
    customize UnixCCompiler
      libraries tatlas not found in ['/Library/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE

    atlas_3_10_blas_info:
    customize UnixCCompiler
      libraries satlas not found in ['/Library/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE

    atlas_blas_threads_info:
    Setting PTATLAS=ATLAS
    customize UnixCCompiler
      libraries ptf77blas,ptcblas,atlas not found in ['/Library/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE

    atlas_blas_info:
    customize UnixCCompiler
      libraries f77blas,cblas,atlas not found in ['/Library/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE

    accelerate_info:
      FOUND:
        extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
        extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
        define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

      FOUND:
        extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
        extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
        define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

    running install
    running build
    running config_cc
    unifing config_cc, config, build_clib, build_ext, build commands --compiler options
    running config_fc
    unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
    running build_src
    build_src
    building library "libsvm-skl" sources
    building extension "sklearn.__check_build._check_build" sources
    building extension "sklearn.cluster._dbscan_inner" sources
    building extension "sklearn.cluster._hierarchical" sources
    building extension "sklearn.cluster._k_means_elkan" sources
    building extension "sklearn.cluster._k_means" sources
    building extension "sklearn.datasets._svmlight_format" sources
    building extension "sklearn.decomposition._online_lda" sources
    building extension "sklearn.decomposition.cdnmf_fast" sources
    building extension "sklearn.ensemble._gradient_boosting" sources
    building extension "sklearn.feature_extraction._hashing" sources
    building extension "sklearn.manifold._utils" sources
    building extension "sklearn.manifold._barnes_hut_tsne" sources
    building extension "sklearn.metrics.pairwise_fast" sources
    building extension "sklearn.metrics/cluster.expected_mutual_info_fast" sources
    building extension "sklearn.neighbors.ball_tree" sources
    building extension "sklearn.neighbors.kd_tree" sources
    building extension "sklearn.neighbors.dist_metrics" sources
    building extension "sklearn.neighbors.typedefs" sources
    building extension "sklearn.neighbors.quad_tree" sources
    building extension "sklearn.tree._tree" sources
    building extension "sklearn.tree._splitter" sources
    building extension "sklearn.tree._criterion" sources
    building extension "sklearn.tree._utils" sources
    building extension "sklearn.svm.libsvm" sources
    building extension "sklearn.svm.liblinear" sources
    building extension "sklearn.svm.libsvm_sparse" sources
    building extension "sklearn._isotonic" sources
    building extension "sklearn.linear_model.cd_fast" sources
    building extension "sklearn.linear_model.sgd_fast" sources
    building extension "sklearn.linear_model.sag_fast" sources
    building extension "sklearn.utils.sparsefuncs_fast" sources
    building extension "sklearn.utils.arrayfuncs" sources
    building extension "sklearn.utils.murmurhash" sources
    building extension "sklearn.utils.lgamma" sources
    building extension "sklearn.utils.graph_shortest_path" sources
    building extension "sklearn.utils.fast_dict" sources
    building extension "sklearn.utils.seq_dataset" sources
    building extension "sklearn.utils.weight_vector" sources
    building extension "sklearn.utils._random" sources
    building extension "sklearn.utils._logistic_sigmoid" sources
    building data_files sources
    build_src: building npy-pkg config files
    running build_py
    creating build
    creating build/lib.macosx-10.9-x86_64-3.7
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/base.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/calibration.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/cross_validation.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/discriminant_analysis.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/dummy.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/exceptions.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/grid_search.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/isotonic.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/kernel_approximation.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/kernel_ridge.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/learning_curve.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/multiclass.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/multioutput.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/naive_bayes.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/pipeline.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/random_projection.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    copying sklearn/setup.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/__check_build
    copying sklearn/__check_build/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/__check_build
    copying sklearn/__check_build/setup.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/__check_build
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/_build_utils
    copying sklearn/_build_utils/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/_build_utils
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/covariance
    copying sklearn/covariance/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/covariance
    copying sklearn/covariance/empirical_covariance_.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/covariance
    copying sklearn/covariance/graph_lasso_.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/covariance
    copying sklearn/covariance/outlier_detection.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/covariance
    copying sklearn/covariance/robust_covariance.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/covariance
    copying sklearn/covariance/shrunk_covariance_.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/covariance
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/covariance/tests
    copying sklearn/covariance/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/covariance/tests
    copying sklearn/covariance/tests/test_covariance.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/covariance/tests
    copying sklearn/covariance/tests/test_graph_lasso.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/covariance/tests
    copying sklearn/covariance/tests/test_robust_covariance.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/covariance/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/cross_decomposition
    copying sklearn/cross_decomposition/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/cross_decomposition
    copying sklearn/cross_decomposition/cca_.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/cross_decomposition
    copying sklearn/cross_decomposition/pls_.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/cross_decomposition
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/cross_decomposition/tests
    copying sklearn/cross_decomposition/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/cross_decomposition/tests
    copying sklearn/cross_decomposition/tests/test_pls.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/cross_decomposition/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/base.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/from_model.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/mutual_info_.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/rfe.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/univariate_selection.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/variance_threshold.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_base.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_chi2.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_feature_select.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_from_model.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_mutual_info.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_rfe.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_variance_threshold.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/feature_selection/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process
    copying sklearn/gaussian_process/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process
    copying sklearn/gaussian_process/correlation_models.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process
    copying sklearn/gaussian_process/gaussian_process.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process
    copying sklearn/gaussian_process/gpc.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process
    copying sklearn/gaussian_process/gpr.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process
    copying sklearn/gaussian_process/kernels.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process
    copying sklearn/gaussian_process/regression_models.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process/tests
    copying sklearn/gaussian_process/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process/tests
    copying sklearn/gaussian_process/tests/test_gaussian_process.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process/tests
    copying sklearn/gaussian_process/tests/test_gpc.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process/tests
    copying sklearn/gaussian_process/tests/test_gpr.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process/tests
    copying sklearn/gaussian_process/tests/test_kernels.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/gaussian_process/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture
    copying sklearn/mixture/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture
    copying sklearn/mixture/base.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture
    copying sklearn/mixture/bayesian_mixture.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture
    copying sklearn/mixture/dpgmm.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture
    copying sklearn/mixture/gaussian_mixture.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture
    copying sklearn/mixture/gmm.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture/tests
    copying sklearn/mixture/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture/tests
    copying sklearn/mixture/tests/test_bayesian_mixture.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture/tests
    copying sklearn/mixture/tests/test_dpgmm.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture/tests
    copying sklearn/mixture/tests/test_gaussian_mixture.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture/tests
    copying sklearn/mixture/tests/test_gmm.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/mixture/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/model_selection
    copying sklearn/model_selection/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/model_selection
    copying sklearn/model_selection/_search.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/model_selection
    copying sklearn/model_selection/_split.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/model_selection
    copying sklearn/model_selection/_validation.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/model_selection
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/model_selection/tests
    copying sklearn/model_selection/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/model_selection/tests
    copying sklearn/model_selection/tests/common.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/model_selection/tests
    copying sklearn/model_selection/tests/test_search.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/model_selection/tests
    copying sklearn/model_selection/tests/test_split.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/model_selection/tests
    copying sklearn/model_selection/tests/test_validation.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/model_selection/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/neural_network
    copying sklearn/neural_network/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neural_network
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    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/base.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/classification.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/pairwise.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/ranking.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/regression.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/scorer.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/setup.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/test_classification.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/test_common.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/test_pairwise.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/test_ranking.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/test_regression.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/test_score_objects.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/cluster
    copying sklearn/metrics/cluster/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/cluster
    copying sklearn/metrics/cluster/bicluster.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/cluster
    copying sklearn/metrics/cluster/setup.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/cluster
    copying sklearn/metrics/cluster/supervised.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/cluster
    copying sklearn/metrics/cluster/unsupervised.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/cluster
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/cluster/tests
    copying sklearn/metrics/cluster/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/cluster/tests
    copying sklearn/metrics/cluster/tests/test_bicluster.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/cluster/tests
    copying sklearn/metrics/cluster/tests/test_supervised.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/cluster/tests
    copying sklearn/metrics/cluster/tests/test_unsupervised.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/metrics/cluster/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/approximate.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/base.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/classification.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/graph.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/kde.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/lof.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/nearest_centroid.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/regression.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/setup.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/unsupervised.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_approximate.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_ball_tree.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_dist_metrics.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_kd_tree.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_kde.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_lof.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_nearest_centroid.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_neighbors.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_quad_tree.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/neighbors/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/tree
    copying sklearn/tree/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tree
    copying sklearn/tree/export.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tree
    copying sklearn/tree/setup.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tree
    copying sklearn/tree/tree.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tree
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/tree/tests
    copying sklearn/tree/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tree/tests
    copying sklearn/tree/tests/test_export.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tree/tests
    copying sklearn/tree/tests/test_tree.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tree/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/svm
    copying sklearn/svm/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/svm
    copying sklearn/svm/base.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/svm
    copying sklearn/svm/bounds.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/svm
    copying sklearn/svm/classes.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/svm
    copying sklearn/svm/setup.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/svm
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/svm/tests
    copying sklearn/svm/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/svm/tests
    copying sklearn/svm/tests/test_bounds.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/svm/tests
    copying sklearn/svm/tests/test_sparse.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/svm/tests
    copying sklearn/svm/tests/test_svm.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/svm/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/base.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/bayes.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/coordinate_descent.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/huber.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/least_angle.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/logistic.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/omp.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/passive_aggressive.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/perceptron.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/randomized_l1.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/ransac.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/ridge.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/sag.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/setup.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/stochastic_gradient.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/theil_sen.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_base.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_bayes.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_coordinate_descent.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_huber.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_least_angle.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_logistic.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_omp.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_passive_aggressive.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_perceptron.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_randomized_l1.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_ransac.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_ridge.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_sag.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_sgd.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_sparse_coordinate_descent.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_theil_sen.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/linear_model/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/_scipy_sparse_lsqr_backport.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/arpack.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/bench.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/class_weight.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/deprecation.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/estimator_checks.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/extmath.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/fixes.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/graph.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/linear_assignment_.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/metaestimators.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/mocking.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/multiclass.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/optimize.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/random.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/setup.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/sparsefuncs.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/stats.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/testing.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    copying sklearn/utils/validation.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/sparsetools
    copying sklearn/utils/sparsetools/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/sparsetools
    copying sklearn/utils/sparsetools/setup.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/sparsetools
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/sparsetools/tests
    copying sklearn/utils/sparsetools/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/sparsetools/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_bench.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_class_weight.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_deprecation.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_estimator_checks.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_extmath.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_fast_dict.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_fixes.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_linear_assignment.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_metaestimators.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_multiclass.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_murmurhash.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_optimize.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_random.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_seq_dataset.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_shortest_path.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_sparsefuncs.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_stats.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_testing.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_utils.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_validation.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/utils/tests
    creating build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_base.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_calibration.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_check_build.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_common.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_config.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_cross_validation.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_discriminant_analysis.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_docstring_parameters.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_dummy.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_grid_search.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_init.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_isotonic.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_kernel_approximation.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_kernel_ridge.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_learning_curve.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_metaestimators.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_multiclass.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_multioutput.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_naive_bayes.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_pipeline.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_random_projection.py -> build/lib.macosx-10.9-x86_64-3.7/sklearn/tests
    running build_clib
    customize UnixCCompiler
    customize UnixCCompiler using build_clib
    building 'libsvm-skl' library
    compiling C++ sources
    C compiler: g++ -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g

    creating build/temp.macosx-10.9-x86_64-3.7
    creating build/temp.macosx-10.9-x86_64-3.7/sklearn
    creating build/temp.macosx-10.9-x86_64-3.7/sklearn/svm
    creating build/temp.macosx-10.9-x86_64-3.7/sklearn/svm/src
    creating build/temp.macosx-10.9-x86_64-3.7/sklearn/svm/src/libsvm
    compile options: '-I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -c'
    g++: sklearn/svm/src/libsvm/libsvm_template.cpp
    ar: adding 1 object files to build/temp.macosx-10.9-x86_64-3.7/liblibsvm-skl.a
    ranlib:@ build/temp.macosx-10.9-x86_64-3.7/liblibsvm-skl.a
    running build_ext
    customize UnixCCompiler
    customize UnixCCompiler using build_ext
    customize UnixCCompiler
    customize UnixCCompiler using build_ext
    building 'sklearn.__check_build._check_build' extension
    compiling C sources
    C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g

    creating build/temp.macosx-10.9-x86_64-3.7/sklearn/__check_build
    compile options: '-I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
    gcc: sklearn/__check_build/_check_build.c
    sklearn/__check_build/_check_build.c:1300:19: warning: will never be executed [-Wunreachable-code]
            int one = 1; int little = (int)*(unsigned char *)&one;
                      ^
    sklearn/__check_build/_check_build.c:1294:20: warning: will never be executed [-Wunreachable-code]
            } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
                       ^~~~~~~~~~~~
    sklearn/__check_build/_check_build.c:1286:20: warning: will never be executed [-Wunreachable-code]
            } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
                       ^~~~~~~~~~~~
    sklearn/__check_build/_check_build.c:1281:13: warning: will never be executed [-Wunreachable-code]
            if (sizeof(long) < sizeof(long)) {
                ^~~~~~~~~~~~
    sklearn/__check_build/_check_build.c:1478:13: warning: will never be executed [-Wunreachable-code]
                long val;
                ^~~~~~~~~
    sklearn/__check_build/_check_build.c:1468:24: warning: will never be executed [-Wunreachable-code]
                } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
                           ^~~~~~~~~~~~
    sklearn/__check_build/_check_build.c:1459:58: warning: will never be executed [-Wunreachable-code]
                                return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                                                             ^~~~~~
    sklearn/__check_build/_check_build.c:1456:29: warning: will never be executed [-Wunreachable-code]
                            if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                                ^
    sklearn/__check_build/_check_build.c:1450:52: warning: will never be executed [-Wunreachable-code]
                                return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                                                       ^
    sklearn/__check_build/_check_build.c:1447:29: warning: will never be executed [-Wunreachable-code]
                            if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                                ^
    sklearn/__check_build/_check_build.c:1441:56: warning: will never be executed [-Wunreachable-code]
                                return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                                                           ^~~~~~
    sklearn/__check_build/_check_build.c:1432:52: warning: will never be executed [-Wunreachable-code]
                                return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                                                       ^
    sklearn/__check_build/_check_build.c:1426:21: warning: will never be executed [-Wunreachable-code]
                        break;
                        ^~~~~
    sklearn/__check_build/_check_build.c:1422:36: warning: will never be executed [-Wunreachable-code]
                            } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                                       ^
    sklearn/__check_build/_check_build.c:1417:21: warning: will never be executed [-Wunreachable-code]
                        break;
                        ^~~~~
    sklearn/__check_build/_check_build.c:1413:36: warning: will never be executed [-Wunreachable-code]
                            } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                                       ^
    sklearn/__check_build/_check_build.c:1398:24: warning: will never be executed [-Wunreachable-code]
                } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
                           ^~~~~~~~~~~~
    sklearn/__check_build/_check_build.c:1349:51: warning: will never be executed [-Wunreachable-code]
                const digit* digits = ((PyLongObject*)x)->ob_digit;
                                                      ^
    sklearn/__check_build/_check_build.c:1376:57: warning: will never be executed [-Wunreachable-code]
                                return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                                                            ^~~~~~
    sklearn/__check_build/_check_build.c:1373:29: warning: will never be executed [-Wunreachable-code]
                            if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                                ^
    sklearn/__check_build/_check_build.c:1367:55: warning: will never be executed [-Wunreachable-code]
                                return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                                                          ^~~~~~
    sklearn/__check_build/_check_build.c:1361:21: warning: will never be executed [-Wunreachable-code]
                        break;
                        ^~~~~
    sklearn/__check_build/_check_build.c:1357:36: warning: will never be executed [-Wunreachable-code]
                            } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) {
                                       ^
    sklearn/__check_build/_check_build.c:1667:13: warning: will never be executed [-Wunreachable-code]
                int val;
                ^~~~~~~~
    sklearn/__check_build/_check_build.c:1657:24: warning: will never be executed [-Wunreachable-code]
                } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
                           ^~~~~~~~~~~
    sklearn/__check_build/_check_build.c:1648:56: warning: will never be executed [-Wunreachable-code]
                                return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                                                           ^~~~~~
    sklearn/__check_build/_check_build.c:1645:29: warning: will never be executed [-Wunreachable-code]
                            if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                                ^
    sklearn/__check_build/_check_build.c:1639:50: warning: will never be executed [-Wunreachable-code]
                                return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                                                     ^
    sklearn/__check_build/_check_build.c:1636:29: warning: will never be executed [-Wunreachable-code]
                            if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                                ^
    sklearn/__check_build/_check_build.c:1630:54: warning: will never be executed [-Wunreachable-code]
                                return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                                                         ^~~~~~
    sklearn/__check_build/_check_build.c:1627:29: warning: will never be executed [-Wunreachable-code]
                            if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                                ^
    sklearn/__check_build/_check_build.c:1621:50: warning: will never be executed [-Wunreachable-code]
                                return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                                                     ^
    sklearn/__check_build/_check_build.c:1618:29: warning: will never be executed [-Wunreachable-code]
                            if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                                ^
    sklearn/__check_build/_check_build.c:1611:36: warning: will never be executed [-Wunreachable-code]
                            } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                                       ^
    sklearn/__check_build/_check_build.c:1612:52: warning: will never be executed [-Wunreachable-code]
                                return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                                                       ^~~~~~
    sklearn/__check_build/_check_build.c:1602:36: warning: will never be executed [-Wunreachable-code]
                            } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                                       ^
    sklearn/__check_build/_check_build.c:1603:50: warning: will never be executed [-Wunreachable-code]
                                return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                                                     ^
    sklearn/__check_build/_check_build.c:1587:24: warning: will never be executed [-Wunreachable-code]
                } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
                           ^~~~~~~~~~~
    sklearn/__check_build/_check_build.c:1538:51: warning: will never be executed [-Wunreachable-code]
                const digit* digits = ((PyLongObject*)x)->ob_digit;
                                                      ^
    sklearn/__check_build/_check_build.c:1565:55: warning: will never be executed [-Wunreachable-code]
                                return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                                                          ^~~~~~
    sklearn/__check_build/_check_build.c:1562:29: warning: will never be executed [-Wunreachable-code]
                            if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                                ^
    sklearn/__check_build/_check_build.c:1556:53: warning: will never be executed [-Wunreachable-code]
                                return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                                                        ^~~~~~
    sklearn/__check_build/_check_build.c:1553:29: warning: will never be executed [-Wunreachable-code]
                            if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                                ^
    sklearn/__check_build/_check_build.c:1546:36: warning: will never be executed [-Wunreachable-code]
                            } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) {
                                       ^
    sklearn/__check_build/_check_build.c:1547:51: warning: will never be executed [-Wunreachable-code]
                                return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                                                      ^~~~~~
    sklearn/__check_build/_check_build.c:1925:51: warning: will never be executed [-Wunreachable-code]
                 return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
                                                      ^~~~~~
    sklearn/__check_build/_check_build.c:1920:50: warning: will never be executed [-Wunreachable-code]
                 return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
                                                     ^~~~~~
    sklearn/__check_build/_check_build.c:1915:49: warning: will never be executed [-Wunreachable-code]
                 return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
                                                    ^~~~~~
    sklearn/__check_build/_check_build.c:1910:48: warning: will never be executed [-Wunreachable-code]
                 return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
                                                   ^~~~~~
    sklearn/__check_build/_check_build.c:1907:12: warning: will never be executed [-Wunreachable-code]
               break;
               ^~~~~
    sklearn/__check_build/_check_build.c:1902:12: warning: will never be executed [-Wunreachable-code]
               break;
               ^~~~~
    51 warnings generated.
    gcc -bundle -undefined dynamic_lookup -arch x86_64 -g build/temp.macosx-10.9-x86_64-3.7/sklearn/__check_build/_check_build.o -Lbuild/temp.macosx-10.9-x86_64-3.7 -o build/lib.macosx-10.9-x86_64-3.7/sklearn/__check_build/_check_build.cpython-37m-darwin.so
    building 'sklearn.cluster._dbscan_inner' extension
    compiling C++ sources
    C compiler: g++ -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g

    creating build/temp.macosx-10.9-x86_64-3.7/sklearn/cluster
    compile options: '-I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
    g++: sklearn/cluster/_dbscan_inner.cpp
    In file included from sklearn/cluster/_dbscan_inner.cpp:514:
    In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
    In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
    In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821:
    /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
    #warning "Using deprecated NumPy API, disable it by " \
     ^
    sklearn/cluster/_dbscan_inner.cpp:1659:9: warning: declaration does not declare anything [-Wmissing-declarations]
            CYTHON_FALLTHROUGH;
            ^~~~~~~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:428:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
          #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
                                     ^~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:1661:9: warning: declaration does not declare anything [-Wmissing-declarations]
            CYTHON_FALLTHROUGH;
            ^~~~~~~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:428:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
          #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
                                     ^~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:1663:9: warning: declaration does not declare anything [-Wmissing-declarations]
            CYTHON_FALLTHROUGH;
            ^~~~~~~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:428:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
          #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
                                     ^~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:1672:9: warning: declaration does not declare anything [-Wmissing-declarations]
            CYTHON_FALLTHROUGH;
            ^~~~~~~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:428:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
          #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
                                     ^~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:1678:9: warning: declaration does not declare anything [-Wmissing-declarations]
            CYTHON_FALLTHROUGH;
            ^~~~~~~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:428:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
          #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
                                     ^~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:2850:7: warning: will never be executed [-Wunreachable-code]
          break;
          ^~~~~
    sklearn/cluster/_dbscan_inner.cpp:5960:21: error: no member named 'exc_type' in '_ts'
        *type = tstate->exc_type;
                ~~~~~~  ^
    sklearn/cluster/_dbscan_inner.cpp:5961:22: error: no member named 'exc_value' in '_ts'; did you mean 'curexc_value'?
        *value = tstate->exc_value;
                         ^~~~~~~~~
                         curexc_value
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:5962:19: error: no member named 'exc_traceback' in '_ts'; did you mean 'curexc_traceback'?
        *tb = tstate->exc_traceback;
                      ^~~~~~~~~~~~~
                      curexc_traceback
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:5969:24: error: no member named 'exc_type' in '_ts'
        tmp_type = tstate->exc_type;
                   ~~~~~~  ^
    sklearn/cluster/_dbscan_inner.cpp:5970:25: error: no member named 'exc_value' in '_ts'; did you mean 'curexc_value'?
        tmp_value = tstate->exc_value;
                            ^~~~~~~~~
                            curexc_value
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:5971:22: error: no member named 'exc_traceback' in '_ts'; did you mean 'curexc_traceback'?
        tmp_tb = tstate->exc_traceback;
                         ^~~~~~~~~~~~~
                         curexc_traceback
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:5972:13: error: no member named 'exc_type' in '_ts'
        tstate->exc_type = type;
        ~~~~~~  ^
    sklearn/cluster/_dbscan_inner.cpp:5973:13: error: no member named 'exc_value' in '_ts'; did you mean 'curexc_value'?
        tstate->exc_value = value;
                ^~~~~~~~~
                curexc_value
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:5974:13: error: no member named 'exc_traceback' in '_ts'; did you mean 'curexc_traceback'?
        tstate->exc_traceback = tb;
                ^~~~~~~~~~~~~
                curexc_traceback
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:6029:24: error: no member named 'exc_type' in '_ts'
        tmp_type = tstate->exc_type;
                   ~~~~~~  ^
    sklearn/cluster/_dbscan_inner.cpp:6030:25: error: no member named 'exc_value' in '_ts'; did you mean 'curexc_value'?
        tmp_value = tstate->exc_value;
                            ^~~~~~~~~
                            curexc_value
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:6031:22: error: no member named 'exc_traceback' in '_ts'; did you mean 'curexc_traceback'?
        tmp_tb = tstate->exc_traceback;
                         ^~~~~~~~~~~~~
                         curexc_traceback
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:6032:13: error: no member named 'exc_type' in '_ts'
        tstate->exc_type = local_type;
        ~~~~~~  ^
    sklearn/cluster/_dbscan_inner.cpp:6033:13: error: no member named 'exc_value' in '_ts'; did you mean 'curexc_value'?
        tstate->exc_value = local_value;
                ^~~~~~~~~
                curexc_value
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:6034:13: error: no member named 'exc_traceback' in '_ts'; did you mean 'curexc_traceback'?
        tstate->exc_traceback = local_tb;
                ^~~~~~~~~~~~~
                curexc_traceback
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    7 warnings and 15 errors generated.
    In file included from sklearn/cluster/_dbscan_inner.cpp:514:
    In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
    In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
    In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821:
    /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
    #warning "Using deprecated NumPy API, disable it by " \
     ^
    sklearn/cluster/_dbscan_inner.cpp:1659:9: warning: declaration does not declare anything [-Wmissing-declarations]
            CYTHON_FALLTHROUGH;
            ^~~~~~~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:428:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
          #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
                                     ^~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:1661:9: warning: declaration does not declare anything [-Wmissing-declarations]
            CYTHON_FALLTHROUGH;
            ^~~~~~~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:428:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
          #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
                                     ^~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:1663:9: warning: declaration does not declare anything [-Wmissing-declarations]
            CYTHON_FALLTHROUGH;
            ^~~~~~~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:428:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
          #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
                                     ^~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:1672:9: warning: declaration does not declare anything [-Wmissing-declarations]
            CYTHON_FALLTHROUGH;
            ^~~~~~~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:428:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
          #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
                                     ^~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:1678:9: warning: declaration does not declare anything [-Wmissing-declarations]
            CYTHON_FALLTHROUGH;
            ^~~~~~~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:428:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
          #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
                                     ^~~~~~~~~~~~~
    sklearn/cluster/_dbscan_inner.cpp:2850:7: warning: will never be executed [-Wunreachable-code]
          break;
          ^~~~~
    sklearn/cluster/_dbscan_inner.cpp:5960:21: error: no member named 'exc_type' in '_ts'
        *type = tstate->exc_type;
                ~~~~~~  ^
    sklearn/cluster/_dbscan_inner.cpp:5961:22: error: no member named 'exc_value' in '_ts'; did you mean 'curexc_value'?
        *value = tstate->exc_value;
                         ^~~~~~~~~
                         curexc_value
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:5962:19: error: no member named 'exc_traceback' in '_ts'; did you mean 'curexc_traceback'?
        *tb = tstate->exc_traceback;
                      ^~~~~~~~~~~~~
                      curexc_traceback
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:5969:24: error: no member named 'exc_type' in '_ts'
        tmp_type = tstate->exc_type;
                   ~~~~~~  ^
    sklearn/cluster/_dbscan_inner.cpp:5970:25: error: no member named 'exc_value' in '_ts'; did you mean 'curexc_value'?
        tmp_value = tstate->exc_value;
                            ^~~~~~~~~
                            curexc_value
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:5971:22: error: no member named 'exc_traceback' in '_ts'; did you mean 'curexc_traceback'?
        tmp_tb = tstate->exc_traceback;
                         ^~~~~~~~~~~~~
                         curexc_traceback
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:5972:13: error: no member named 'exc_type' in '_ts'
        tstate->exc_type = type;
        ~~~~~~  ^
    sklearn/cluster/_dbscan_inner.cpp:5973:13: error: no member named 'exc_value' in '_ts'; did you mean 'curexc_value'?
        tstate->exc_value = value;
                ^~~~~~~~~
                curexc_value
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:5974:13: error: no member named 'exc_traceback' in '_ts'; did you mean 'curexc_traceback'?
        tstate->exc_traceback = tb;
                ^~~~~~~~~~~~~
                curexc_traceback
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:6029:24: error: no member named 'exc_type' in '_ts'
        tmp_type = tstate->exc_type;
                   ~~~~~~  ^
    sklearn/cluster/_dbscan_inner.cpp:6030:25: error: no member named 'exc_value' in '_ts'; did you mean 'curexc_value'?
        tmp_value = tstate->exc_value;
                            ^~~~~~~~~
                            curexc_value
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:6031:22: error: no member named 'exc_traceback' in '_ts'; did you mean 'curexc_traceback'?
        tmp_tb = tstate->exc_traceback;
                         ^~~~~~~~~~~~~
                         curexc_traceback
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:6032:13: error: no member named 'exc_type' in '_ts'
        tstate->exc_type = local_type;
        ~~~~~~  ^
    sklearn/cluster/_dbscan_inner.cpp:6033:13: error: no member named 'exc_value' in '_ts'; did you mean 'curexc_value'?
        tstate->exc_value = local_value;
                ^~~~~~~~~
                curexc_value
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
        PyObject *curexc_value;
                  ^
    sklearn/cluster/_dbscan_inner.cpp:6034:13: error: no member named 'exc_traceback' in '_ts'; did you mean 'curexc_traceback'?
        tstate->exc_traceback = local_tb;
                ^~~~~~~~~~~~~
                curexc_traceback
    /Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
        PyObject *curexc_traceback;
                  ^
    7 warnings and 15 errors generated.
    error: Command "g++ -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c sklearn/cluster/_dbscan_inner.cpp -o build/temp.macosx-10.9-x86_64-3.7/sklearn/cluster/_dbscan_inner.o -MMD -MF build/temp.macosx-10.9-x86_64-3.7/sklearn/cluster/_dbscan_inner.o.d" failed with exit status 1

    ----------------------------------------
  Rolling back uninstall of scikit-learn
Command "/Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7 -u -c "import setuptools, tokenize;__file__='/private/tmp/pip-install-fgkn1ouj/scikit-learn/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/tmp/pip-record-zmv6r6kz/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/tmp/pip-install-fgkn1ouj/scikit-learn/
stephensolis commented 5 years ago

This is not a Kameris issue. Try brew install scikit-learn

mavino commented 5 years ago

please do not close the issue if not verified

mavino commented 5 years ago 
brew install scikit-learn
Error: No available formula for scikit-learn 
Searching formulae...
Searching taps...
mavino commented 5 years ago 
Lab$ kameris classify hiv1-mlp hiv1-genomes
INFO     retrieving 'https://raw.githubusercontent.com/stephensolis/kameris-experiments/master/files.yml'
/Users/Lab/anaconda/lib/python2.7/site-packages/urllib3/util/ssl_.py:354: SNIMissingWarning: An HTTPS request has been made, but the SNI (Server Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. You can upgrade to a newer version of Python to solve this. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
  SNIMissingWarning
INFO     file 'https://raw.githubusercontent.com/stephensolis/kameris-experiments/master/models/hiv1-mlp-py2.mm-model' already downloaded, using cached version
INFO     started loading model
INFO     finished loading model in 0.01 seconds
INFO     started computing input CGRs
INFO     running command ""/Users/Lab/anaconda/lib/python2.7/site-packages/kameris/scripts/generation_cgr_mac_avx2" cgr "hiv1-genomes" "/var/folders/5p/mvgcw45d5rs13x2hr3k59nlw0000gn/T/tmpDhVvir/cgrs.mm-repr" 6 16"
INFO     5 files, using 8 threads
INFO     20% [======>                            ] 1/5 ETA:0s
INFO     started frequency-normalizing CGRs
ERROR    an unexpected error occurred: TypeError: Struct() argument 1 must be string, not unicode
ERROR    ***if you believe this is a bug, please report it at https://github.com/stephensolis/kameris/issues and include ALL the following text:***
Traceback (most recent call last):
  File "/Users/Lab/anaconda/lib/python2.7/site-packages/kameris/__main__.py", line 41, in main
    run_module.run(args)
  File "/Users/Lab/anaconda/lib/python2.7/site-packages/kameris/subcommands/classify.py", line 48, in run
    backend.run_backend_kmers(options, {})
  File "/Users/Lab/anaconda/lib/python2.7/site-packages/kameris/job_steps/backend.py", line 45, in run_backend_kmers
    reader = kameris_formats.repr_reader(options['output_file'])
  File "/Users/Lab/anaconda/lib/python2.7/site-packages/kameris_formats/repr_reader.py", line 27, in __init__
    self.count, = struct.unpack('<Q', self.file.read(8))
TypeError: Struct() argument 1 must be string, not unicode
mavino commented 5 years ago

please @stephensolis reopen the issue, I am recording this for Dr. Kari

stephensolis commented 5 years ago

@mavino This issue as opened is a problem with scikit-learn, not Kameris. I can't help with this. Try Googling for help with installing scikit-learn.

The other error is different and is filed as issue #4