stephenturner oneliners issues

stephenturner / oneliners

Useful bash one-liners for bioinformatics.

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issues

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added a section for samtools and some grep commands

#28 karimhussein1 opened 1 year ago
0
added one-liner find & xargs commands

#27 yashwankhede closed 1 year ago
0
H

#26 UnixCro closed 4 years ago
0
Command for listing everything that does not match a patter requires extended globing be enabled

#25 ColeWunderlich opened 4 years ago
0
Find subdirectories based on file permissions

#24 moldach closed 5 years ago
1
add new awk cmd for fastq and vcf file

#23 silvewheat closed 6 years ago
1
Eddy Edited It

#22 moldach closed 4 years ago
0
Awk search command is not working

#21 saurabhgayali opened 7 years ago
1
oneliers Chineses version

#20 bollwarm closed 7 years ago
1
add sed to count the occurrences of each symbol in a fasta file

#19 felipelouza closed 8 years ago
3
Add a few commands and aliases

#18 enormandeau closed 8 years ago
1
bug in sed 's/[ \t]*$//' example

#17 ipoval opened 8 years ago
0
fix 'Find number of lines shared by 2 files' oneliner - without 'wc -…

#16 ipoval closed 8 years ago
0
add command: tail

#15 jianzuoyi closed 8 years ago
0
Convert a VCF file to a BED file

#14 Phelimb closed 9 years ago
1
bam to fastq one liner

#13 LukeBraidwood opened 9 years ago
2
Generate list of sequence name lengths from a fasta file using awk

#12 danielecook closed 10 years ago
1
add datamash examples

#11 stephenturner closed 8 years ago
0
Added table of contents

#10 rasbt closed 10 years ago
4
PDF creation script

#9 enormandeau closed 10 years ago
3
Small suggestions

#8 enormandeau closed 10 years ago
0
seqtk can de-interleave fastq file, no need awk

#7 hliang closed 10 years ago
1
Added an extract function which can be used in .bashrc

#6 deepstop closed 10 years ago
1
add autojump and fix mistakes

#5 popucui closed 10 years ago
1
Add aliases from alias.sh

#4 stephenturner closed 10 years ago
0
Faster option for "Untangle a FASTQ file. If a FASTQ file has paired-end reads intermingled"

#3 HenrivdGeest closed 11 years ago
3
Fixed copy/paste errors

#2 standage closed 11 years ago
0
Added GFF3 CLI magic from BioWize blog

#1 standage closed 11 years ago
1