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stephenturner / qqman

An R package for creating Q-Q and manhattan plots from GWAS results
http://cran.r-project.org/web/packages/qqman/
GNU General Public License v3.0
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Gaps between Chromosomes #41

Closed BOUDHRIOUA closed 8 years ago

BOUDHRIOUA commented 8 years ago

Hi, Thank you for this package, it is very helpful, I used it to create a plot from my Gapit Ddata for a GWAS on Soybean (12 chromosomes), the problem that am keep having Gaps between my chromosomes. Rplot.pdf. I tried to change the chrlabs but nothing change. I am new to R and I am not sure that am doing the right things. I really need your help Thanks

stephenturner commented 8 years ago

Looks like it has to do with your positions. Eg if all your chr1 snps have positions 1-100, then all your chr2 snps have pos 2000-2100, then you'll have a 1900-bp gap between the end of chr1 and the start of chr2.