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stephenturner / qqman

An R package for creating Q-Q and manhattan plots from GWAS results
http://cran.r-project.org/web/packages/qqman/
GNU General Public License v3.0
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Error in plot.window(...) : need finite 'ylim' values #51

Closed elcansaito closed 7 years ago

elcansaito commented 7 years ago

I know this has been seen before but I can´t figure it out what is the problem.

str(a2) 'data.frame': 131012 obs. of 4 variables: $ SNP: chr "S1_157465" "S1_222471" "S1_222588" "S1_222877" ... $ CHR: num 1 1 1 1 1 1 1 1 1 1 ... $ BP : int 157465 222471 222588 222877 237571 264849 643082 650740 766208 766209 ... $ P : num 0.05848 0.00855 0.30751 0.10895 0.07547 ...

manhattan(a2) Error in plot.window(...) : need finite 'ylim' values

Even If I remove P values larger than 1 it doesn´t work. Any help?

Thanks in advance stephen, J

Example_qqman.RData 2.zip

stephenturner commented 7 years ago

P-values need to be between 0 and 1.

elcansaito commented 7 years ago

Hi Stephen,

Thanks for your reply. I indicated your suggestion in my first post. In the attached file values are between 0 and 1 and it still doesn´t work. It might another thing.

Thanks, J