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stephlj / slopey

Quantification of single-molecule FRET trajectories containing fast, non-instantaneous transitions
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Python code and/or make not playing nicely with the *Results.params.yml files? #10

Closed stephlj closed 8 years ago

stephlj commented 8 years ago

I haven't had a chance to fully debug these problems, but:

(1) It looks like there might be a problem with the discard option in the *Results.params.yml file. I ran our new analysis on a new dataset, for which INO8015nMATP1mMRedFlash_2016_May31_Spot2_187_Results.params.yml has discard = true. It didn't generate a .pkl file for the corresponding .mat file. But then I got this error:

screen shot 2016-06-15 at 8 33 56 am

while make was attempting to generate the corresponding figure.

(2) I changed num_slopey in a different params.yml file, and Make went through the updating process, but the output didn't change. The result still had the original number of slopey bits.

More testing needed but wanted to get this discussion started ...

stephlj commented 8 years ago

fixed (1)! If prereq is a target of an earlier rule, Make doesn't check the file system to see that the prereq exists.