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stergioc / sopa

Technology-invariant pipeline for spatial-omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
https://gustaveroussy.github.io/sopa/
BSD 3-Clause "New" or "Revised" License
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openslide zarr store returns fillvalue for zarr>2.15.0 #3

Closed stergioc closed 6 months ago

stergioc commented 8 months ago

related to: https://github.com/gustaveroussy/sopa/pull/26#issuecomment-1956543612

stergioc commented 6 months ago

The problem was that I implemented wrongly the __contains__ function at the OpenSlideStore class that inherits from zarr.storage.Store. The solution was to just remove it. gustaveroussy/sopa@99d095bfca6db1178e7d8adbb77e76eb94e5bf0e