sterrettJD / HoMi

Host-microbiome dual transcriptome pipeline
https://homi-pipeline.readthedocs.io
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Benchmarks may need new dockerfile #74

Open sterrettJD opened 2 months ago

sterrettJD commented 2 months ago

With R dependencies added to it, can we still run it using the snakemake docker image? I don't think so. Could also specify conda env within that image for all rules. That may be an easier solution.