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sterrettJD / HoMiStats

Statistics for host-microbiome dual transcriptomics
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ZIBR errors with real data #7

Closed sterrettJD closed 9 months ago

sterrettJD commented 9 months ago

Both @jboconnor13 and I are getting an error from ZIBR while running run_mtxDE that:

Error in if (sum(Y > 0)/length(Y) > 0.9) { : 
  missing value where TRUE/FALSE needed

This doesn't happen with the test data...

sterrettJD commented 9 months ago

The issue seems to be that the merge here assumes that both the metadata and feature table have the same row names.

Needs to be updated to merge based on sampleID.

Tests also need to be updated as such!