A C++ library for Bayesian modeling, mainly through Markov chain Monte Carlo, but with a few other methods supported. BOOM = "Bayesian Object Oriented Modeling". It is also the sound your computer makes when it crashes.
installing source package ‘BoomSpikeSlab’ ...
package ‘BoomSpikeSlab’ successfully unpacked and MD5 sums checked
using staged installation
** libs
g++ -std=gnu++11 -I"/opt/R/3.6.1/lib/R/include" -DNDEBUG -I/opt/R/3.6.1/lib/R/bin/Rscript -e "cat(system.file(package='Boom'))"/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I"/libs/workspace/Boom/include" -I/usr/local/include -fpic -g -O2 -c boom_spike_slab_init.cc -o boom_spike_slabinit.o
g++ -std=gnu++11 -I"/opt/R/3.6.1/lib/R/include" -DNDEBUG -I/opt/R/3.6.1/lib/R/bin/Rscript -e "cat(system.file(package='Boom'))"/include -DADD -DR_NO_REMAP -DRLANGUAGE -I"/libs/workspace/Boom/include" -I/usr/local/include -fpic -g -O2 -c logit_spike_slab_wrapper.cc -o logit_spike_slab_wrapper.o
In file included from /libs/workspace/Boom/include/LinAlg/VectorView.hpp:28:0,
from /libs/workspace/Boom/include/LinAlg/Matrix.hpp:24,
from /libs/workspace/Boom/include/r_interface/boom_r_tools.hpp:25,
from /libs/workspace/Boom/include/r_interface/seed_rng_from_R.hpp:22,
from logit_spike_slab_wrapper.cc:10:
/libs/workspace/Boom/include/LinAlg/VectorViewIterator.hpp:183:24: error: specialization of ‘template struct std::iterator_traits’ in different namespace [-fpermissive]
template<> struct std::iterator_traitsBOOM::VectorViewIterator {
^
In file included from /usr/include/c++/4.8.2/bits/stl_algobase.h:65:0,
from /usr/include/c++/4.8.2/bits/char_traits.h:39,
from /usr/include/c++/4.8.2/string:40,
from logit_spike_slab_wrapper.cc:5:
/usr/include/c++/4.8.2/bits/stl_iterator_base_types.h:159:12: error: from definition of ‘template struct std::iterator_traits’ [-fpermissive]
struct iterator_traits
^
In file included from /libs/workspace/Boom/include/LinAlg/VectorView.hpp:28:0,
from /libs/workspace/Boom/include/LinAlg/Matrix.hpp:24,
from /libs/workspace/Boom/include/r_interface/boom_r_tools.hpp:25,
from /libs/workspace/Boom/include/r_interface/seed_rng_from_R.hpp:22,
from logit_spike_slab_wrapper.cc:10:
/libs/workspace/Boom/include/LinAlg/VectorViewIterator.hpp:191:25: error: specialization of ‘template struct std::iterator_traits’ in different namespace [-fpermissive]
template <> struct std::iterator_traitsBOOM::VectorViewConstIterator {
^
In file included from /usr/include/c++/4.8.2/bits/stl_algobase.h:65:0,
from /usr/include/c++/4.8.2/bits/char_traits.h:39,
from /usr/include/c++/4.8.2/string:40,
from logit_spike_slab_wrapper.cc:5:
/usr/include/c++/4.8.2/bits/stl_iterator_base_types.h:159:12: error: from definition of ‘template struct std::iterator_traits’ [-fpermissive]
struct iterator_traits
^
In file included from /libs/workspace/Boom/include/LinAlg/Array.hpp:23:0,
from /libs/workspace/Boom/include/r_interface/boom_r_tools.hpp:28,
from /libs/workspace/Boom/include/r_interface/seed_rng_from_R.hpp:22,
from logit_spike_slab_wrapper.cc:10:
/libs/workspace/Boom/include/LinAlg/ArrayIterator.hpp:135:25: error: specialization of ‘template struct std::iterator_traits’ in different namespace [-fpermissive]
template <> struct std::iterator_traitsBOOM::ArrayIterator {
^
In file included from /usr/include/c++/4.8.2/bits/stl_algobase.h:65:0,
from /usr/include/c++/4.8.2/bits/char_traits.h:39,
from /usr/include/c++/4.8.2/string:40,
from logit_spike_slab_wrapper.cc:5:
/usr/include/c++/4.8.2/bits/stl_iterator_base_types.h:159:12: error: from definition of ‘template struct std::iterator_traits’ [-fpermissive]
struct iterator_traits
^
In file included from /libs/workspace/Boom/include/LinAlg/Array.hpp:23:0,
from /libs/workspace/Boom/include/r_interface/boom_r_tools.hpp:28,
from /libs/workspace/Boom/include/r_interface/seed_rng_from_R.hpp:22,
from logit_spike_slab_wrapper.cc:10:
/libs/workspace/Boom/include/LinAlg/ArrayIterator.hpp:144:24: error: specialization of ‘template struct std::iterator_traits’ in different namespace [-fpermissive]
template<> struct std::iterator_traitsBOOM::ConstArrayIterator {
^
In file included from /usr/include/c++/4.8.2/bits/stl_algobase.h:65:0,
from /usr/include/c++/4.8.2/bits/char_traits.h:39,
from /usr/include/c++/4.8.2/string:40,
from logit_spike_slab_wrapper.cc:5:
/usr/include/c++/4.8.2/bits/stl_iterator_base_types.h:159:12: error: from definition of ‘template struct std::iterator_traits’ [-fpermissive]
struct iterator_traits
^
make: *** [logit_spike_slab_wrapper.o] Error 1
ERROR: compilation failed for package ‘BoomSpikeSlab’
removing ‘/libs/workspace/BoomSpikeSlab’
Warning in install.packages :
installation of package ‘BoomSpikeSlab’ had non-zero exit status
installing source package ‘BoomSpikeSlab’ ... package ‘BoomSpikeSlab’ successfully unpacked and MD5 sums checked using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/3.6.1/lib/R/include" -DNDEBUG -I/opt/R/3.6.1/lib/R/bin/Rscript -e "cat(system.file(package='Boom'))"/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I"/libs/workspace/Boom/include" -I/usr/local/include -fpic -g -O2 -c boom_spike_slab_init.cc -o boom_spike_slabinit.o g++ -std=gnu++11 -I"/opt/R/3.6.1/lib/R/include" -DNDEBUG -I/opt/R/3.6.1/lib/R/bin/Rscript -e "cat(system.file(package='Boom'))"/include -DADD -DR_NO_REMAP -DRLANGUAGE -I"/libs/workspace/Boom/include" -I/usr/local/include -fpic -g -O2 -c logit_spike_slab_wrapper.cc -o logit_spike_slab_wrapper.o In file included from /libs/workspace/Boom/include/LinAlg/VectorView.hpp:28:0, from /libs/workspace/Boom/include/LinAlg/Matrix.hpp:24, from /libs/workspace/Boom/include/r_interface/boom_r_tools.hpp:25, from /libs/workspace/Boom/include/r_interface/seed_rng_from_R.hpp:22, from logit_spike_slab_wrapper.cc:10: /libs/workspace/Boom/include/LinAlg/VectorViewIterator.hpp:183:24: error: specialization of ‘template struct std::iterator_traits’ in different namespace [-fpermissive] template<> struct std::iterator_traitsBOOM::VectorViewIterator { ^ In file included from /usr/include/c++/4.8.2/bits/stl_algobase.h:65:0, from /usr/include/c++/4.8.2/bits/char_traits.h:39, from /usr/include/c++/4.8.2/string:40, from logit_spike_slab_wrapper.cc:5: /usr/include/c++/4.8.2/bits/stl_iterator_base_types.h:159:12: error: from definition of ‘template struct std::iterator_traits’ [-fpermissive] struct iterator_traits ^ In file included from /libs/workspace/Boom/include/LinAlg/VectorView.hpp:28:0, from /libs/workspace/Boom/include/LinAlg/Matrix.hpp:24, from /libs/workspace/Boom/include/r_interface/boom_r_tools.hpp:25, from /libs/workspace/Boom/include/r_interface/seed_rng_from_R.hpp:22, from logit_spike_slab_wrapper.cc:10: /libs/workspace/Boom/include/LinAlg/VectorViewIterator.hpp:191:25: error: specialization of ‘template struct std::iterator_traits’ in different namespace [-fpermissive] template <> struct std::iterator_traitsBOOM::VectorViewConstIterator { ^ In file included from /usr/include/c++/4.8.2/bits/stl_algobase.h:65:0, from /usr/include/c++/4.8.2/bits/char_traits.h:39, from /usr/include/c++/4.8.2/string:40, from logit_spike_slab_wrapper.cc:5: /usr/include/c++/4.8.2/bits/stl_iterator_base_types.h:159:12: error: from definition of ‘template struct std::iterator_traits’ [-fpermissive] struct iterator_traits ^ In file included from /libs/workspace/Boom/include/LinAlg/Array.hpp:23:0, from /libs/workspace/Boom/include/r_interface/boom_r_tools.hpp:28, from /libs/workspace/Boom/include/r_interface/seed_rng_from_R.hpp:22, from logit_spike_slab_wrapper.cc:10: /libs/workspace/Boom/include/LinAlg/ArrayIterator.hpp:135:25: error: specialization of ‘template struct std::iterator_traits’ in different namespace [-fpermissive] template <> struct std::iterator_traitsBOOM::ArrayIterator { ^ In file included from /usr/include/c++/4.8.2/bits/stl_algobase.h:65:0, from /usr/include/c++/4.8.2/bits/char_traits.h:39, from /usr/include/c++/4.8.2/string:40, from logit_spike_slab_wrapper.cc:5: /usr/include/c++/4.8.2/bits/stl_iterator_base_types.h:159:12: error: from definition of ‘template struct std::iterator_traits’ [-fpermissive] struct iterator_traits ^ In file included from /libs/workspace/Boom/include/LinAlg/Array.hpp:23:0, from /libs/workspace/Boom/include/r_interface/boom_r_tools.hpp:28, from /libs/workspace/Boom/include/r_interface/seed_rng_from_R.hpp:22, from logit_spike_slab_wrapper.cc:10: /libs/workspace/Boom/include/LinAlg/ArrayIterator.hpp:144:24: error: specialization of ‘template struct std::iterator_traits’ in different namespace [-fpermissive] template<> struct std::iterator_traitsBOOM::ConstArrayIterator { ^ In file included from /usr/include/c++/4.8.2/bits/stl_algobase.h:65:0, from /usr/include/c++/4.8.2/bits/char_traits.h:39, from /usr/include/c++/4.8.2/string:40, from logit_spike_slab_wrapper.cc:5: /usr/include/c++/4.8.2/bits/stl_iterator_base_types.h:159:12: error: from definition of ‘template struct std::iterator_traits’ [-fpermissive] struct iterator_traits ^ make: *** [logit_spike_slab_wrapper.o] Error 1 ERROR: compilation failed for package ‘BoomSpikeSlab’ removing ‘/libs/workspace/BoomSpikeSlab’ Warning in install.packages : installation of package ‘BoomSpikeSlab’ had non-zero exit status