object 'alTrackHighlightB' not found

[OvoiDs]

Fetching transcripts for gene partners.. ..transcripts fetched. Selecting transcripts for B3GNT6.. ..found transcripts of type intergenic Selecting transcripts for INCA1.. ..found transcripts of type intergenic As INCA1 is on the minus strand, the plot for this gene will be reversed Error in Gviz::plotTracks(collapse = FALSE, list(trBtrack, alTrackHighlightB), : object 'alTrackHighlightB' not found Calls: plotTranscripts ->

Gviz::plotTracks(
        collapse = FALSE, # without this gviz create cluster_X entries in the GeneRegionTrack
        list(grTrackHighlightB, alTrackHighlightB),
        sizes = c(5, 2),
        add = TRUE,
        margin = 3,
        innerMargin = 0,
        # Plot reverse if gene is at minus strand
        reverseStrand = geneBatMinusStrand)
    } else {
      Gviz::plotTracks(
        collapse = FALSE, # without this gviz create cluster_X entries in the GeneRegionTrack
        list(trBtrack, alTrack), <<<<<<<<< here is the stuff
        sizes = c(5, 2),
        add = TRUE,
        margin = 3,
        innerMargin = 0,
        # Plot reverse if gene is at minus strand
        reverseStrand = geneBatMinusStrand)
    }

[stianlagstad]

Thank you. I just pushed the commits to fix this in the devel branch. Unfortunately the 3.5 branch has been closed due to the 3.6 release happening in a few days, so I was not able to fix it there.