Fetching transcripts for gene partners..
..transcripts fetched.
Selecting transcripts for B3GNT6..
..found transcripts of type intergenic
Selecting transcripts for INCA1..
..found transcripts of type intergenic
As INCA1 is on the minus strand, the plot for this gene will be reversed
Error in Gviz::plotTracks(collapse = FALSE, list(trBtrack, alTrackHighlightB), :
object 'alTrackHighlightB' not found
Calls: plotTranscripts ->
Gviz::plotTracks(
collapse = FALSE, # without this gviz create cluster_X entries in the GeneRegionTrack
list(grTrackHighlightB, alTrackHighlightB),
sizes = c(5, 2),
add = TRUE,
margin = 3,
innerMargin = 0,
# Plot reverse if gene is at minus strand
reverseStrand = geneBatMinusStrand)
} else {
Gviz::plotTracks(
collapse = FALSE, # without this gviz create cluster_X entries in the GeneRegionTrack
list(trBtrack, alTrack), <<<<<<<<< here is the stuff
sizes = c(5, 2),
add = TRUE,
margin = 3,
innerMargin = 0,
# Plot reverse if gene is at minus strand
reverseStrand = geneBatMinusStrand)
}
Thank you. I just pushed the commits to fix this in the devel branch. Unfortunately the 3.5 branch has been closed due to the 3.6 release happening in a few days, so I was not able to fix it there.
Fetching transcripts for gene partners.. ..transcripts fetched. Selecting transcripts for B3GNT6.. ..found transcripts of type intergenic Selecting transcripts for INCA1.. ..found transcripts of type intergenic As INCA1 is on the minus strand, the plot for this gene will be reversed Error in Gviz::plotTracks(collapse = FALSE, list(trBtrack, alTrackHighlightB), : object 'alTrackHighlightB' not found Calls: plotTranscripts ->