Closed raunakms closed 6 years ago
Hi! Thank you for your interest in chimeraviz. Could you please run sessionInfo()
and paste the result here? The problem might be that you're using the previous version of Bioconductor and thus the old version of chimeraviz. Here, under "Update Installed Bioconductor Packages", are instructions for how to upgrade Bioconductor and the package you've installed.
sessionInfo() R version 3.4.1 (2017-06-30) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages: [1] grid stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] chimeraviz_1.0.4 ensembldb_2.0.4 AnnotationFilter_1.0.0 GenomicFeatures_1.28.5 AnnotationDbi_1.38.2 Biobase_2.36.2
[7] Gviz_1.20.0 GenomicRanges_1.28.6 GenomeInfoDb_1.12.3 Biostrings_2.44.2 XVector_0.16.0 IRanges_2.10.5
[13] S4Vectors_0.14.7 BiocGenerics_0.22.1
loaded via a namespace (and not attached):
[1] ProtGenerics_1.8.0 bitops_1.0-6 matrixStats_0.52.2 bit64_0.9-7
[5] RColorBrewer_1.1-2 httr_1.3.1 rprojroot_1.2 tools_3.4.1
[9] backports_1.1.1 R6_2.2.2 DT_0.2 rpart_4.1-11
[13] Hmisc_4.0-3 DBI_0.7 lazyeval_0.2.1 colorspace_1.3-2
[17] nnet_7.3-12 gridExtra_2.3 bit_1.1-12 curl_3.0
[21] compiler_3.4.1 htmlTable_1.9 DelayedArray_0.2.7 rtracklayer_1.36.6
[25] scales_0.5.0 checkmate_1.8.5 readr_1.1.1 RCircos_1.2.0
[29] stringr_1.2.0 digest_0.6.12 Rsamtools_1.28.0 foreign_0.8-69
[33] rmarkdown_1.6 base64enc_0.1-3 dichromat_2.0-0 pkgconfig_2.0.1
[37] htmltools_0.3.6 BSgenome_1.44.2 htmlwidgets_0.9 rlang_0.1.4
[41] RSQLite_2.0 BiocInstaller_1.26.1 shiny_1.0.5 BiocParallel_1.10.1
[45] acepack_1.4.1 VariantAnnotation_1.22.3 RCurl_1.95-4.8 magrittr_1.5
[49] GenomeInfoDbData_0.99.0 Formula_1.2-2 Matrix_1.2-10 Rcpp_0.12.13
[53] munsell_0.4.3 stringi_1.1.5 yaml_2.1.14 SummarizedExperiment_1.6.5
[57] zlibbioc_1.22.0 org.Hs.eg.db_3.4.1 plyr_1.8.4 AnnotationHub_2.8.3
[61] blob_1.1.0 lattice_0.20-35 splines_3.4.1 hms_0.3
[65] knitr_1.17 biomaRt_2.32.1 XML_3.98-1.9 evaluate_0.10.1
[69] biovizBase_1.24.0 latticeExtra_0.6-28 data.table_1.10.4-3 httpuv_1.3.5
[73] gtable_0.2.0 ggplot2_2.2.1 mime_0.5 xtable_1.8-2
[77] survival_2.41-3 tibble_1.3.4 GenomicAlignments_1.12.2 memoise_1.1.0
[81] cluster_2.0.6 interactiveDisplayBase_1.14.0 BiocStyle_2.4.1
It looks like you're using an older version of R. Try to install version 3.4.2 so that you can install Bioconductor 2.6. That should get you chimeraviz 1.4.0, which has the plot you're interested in :)
Got following error message: