Closed plijnzaad closed 5 years ago
Note that this PR is deliberately against a much older commit (close to stainlagstad's master), as it is independent of my recent FusionInspector PR's
Closing in favor of https://github.com/stianlagstad/chimeraviz/pull/56. Thank you @plijnzaad !
STAR-fusion >= 1.2.0, when run with
--denovo_reconstruct
has a columnFUSION_CDS
in output filestar-fusion.fusion_predictions.abridged.annotated.coding_effect.tsv
which contains the fusion sequence. This PR extracts it and adds it to the fusion object (in addition to setting attributeinframe
ad also addingFFPM
andannots
tofusionToolSpecificData
)