Closed komalsrathi closed 6 years ago
Hey @komalsrathi! The link width just signifies how many supporting reads (spanning + split) support that fusion event. But it's scaled compared to the other fusion events in the list. So that if you have this list of fusion events:
then the width of fusion3 would be the biggest. Does that make sense?
Oh alright - I have been misunderstanding it as the number of times/samples it was seen in. Thanks for clarifying!
Hi Stian,
I was trying to create the overview plot but a little confused as to what the link widths mean here:
https://bioconductor.org/packages/release/bioc/vignettes/chimeraviz/inst/doc/chimeraviz-vignette.html#building-the-overview-plot
Initially I thought it represents how many times the event was observed. But the width between
EDA-RFWD3
is greater thanEEF1A1P5-PABPC1
even thoughEEF1A1P5-PABPC1
is seen 4 times andEDA-RFWD3
is seen only once. Can you please explain?Thank you, Komal