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stianlagstad / chimeraviz

chimeraviz is an R package that automates the creation of chimeric RNA visualizations.
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current vignette has lots of warnings #43

Closed vjcitn closed 5 years ago

vjcitn commented 6 years ago

have a look at

https://bioconductor.org/packages/release/bioc/vignettes/chimeraviz/inst/doc/chimeraviz-vignette.html

there are lots of

Warning in readtokens(data, tokenizer, col_specs, colnames, locale, :

length of NULL cannot be changed

Warning in readtokens(data, tokenizer, col_specs, colnames, locale, :

length of NULL cannot be changed

Warning in readtokens(data, tokenizer, col_specs, colnames, locale, :

length of NULL cannot be changed

Warning in readtokens(data, tokenizer, col_specs, colnames, locale, :

length of NULL cannot be changed

Warning in readtokens(data, tokenizer, col_specs, colnames, locale, :

length of NULL cannot be changed

in the document. Let me know if you need more information.

stianlagstad commented 6 years ago

Thank you for bringing this to my attention, @vjcitn! I believe it's caused by https://github.com/tidyverse/readr/issues/750, which now seem to have been fixed. I will look at it shortly.

stianlagstad commented 5 years ago

Moving from readr to using data.table in https://github.com/stianlagstad/chimeraviz/commit/bd3f6fd2f7bf40e9fddbfa25fc25bb9384136095

The https://travis-ci.org/stianlagstad/chimeraviz/builds/429227218 build should go green. Will close this PR then.

stianlagstad commented 5 years ago

OK for devel. Will do the same changes for release.