SCCRIP (Sickle Cell Clinical Research and Intervention Program) established a longitudinal cohort at multiple sites with Sickle Cell Disease (SCD) in 2014 managed by St. Jude Clinical Hematology. A new collaborator for SCCRIP has longitudinal data for 600 SCD patients in OMOP CDM format and this effort is to convert OMOP CDM to SCCRIP format.
ATHENA allows you to both search and load standardized vocabularies. It is a resource to be used, not a software tool to install. To download a zip file with all Standardized Vocabularies tables select all the vocabularies you need for your OMOP CDM. Vocabularies with standard concepts and very common usage are preselected. Add vocabularies that are used in your source data. Vocabularies that are proprietary have no select button. Click on the “License required” button to incorporate such a vocabulary into your list. The Vocabulary Team will contact you and request you demonstrate your license or help you connect to the right folks to obtain one.
Verify Install
Introductory Tutorials
https://ohdsi.org/ohdsi2022-tutorial/
https://ohdsi.org/open-source-tutorials/
Practice with use cases
Discuss OHDSI tool among team with specific relevance to Integrating SCCRIP Data in OMOP format.
From https://ohdsi.org/software-tools/ below
ATHENA allows you to both search and load standardized vocabularies. It is a resource to be used, not a software tool to install. To download a zip file with all Standardized Vocabularies tables select all the vocabularies you need for your OMOP CDM. Vocabularies with standard concepts and very common usage are preselected. Add vocabularies that are used in your source data. Vocabularies that are proprietary have no select button. Click on the “License required” button to incorporate such a vocabulary into your list. The Vocabulary Team will contact you and request you demonstrate your license or help you connect to the right folks to obtain one.
ATHENA LINKS Vocabularies: Click Here Source Code: GitHub “10-Minute Tutorial” Video: Click Here