Load Synthea CSV data to OMOP CDM

stjude-biohackathon / KIDS23-Team3

SCCRIP (Sickle Cell Clinical Research and Intervention Program) established a longitudinal cohort at multiple sites with Sickle Cell Disease (SCD) in 2014 managed by St. Jude Clinical Hematology. A new collaborator for SCCRIP has longitudinal data for 600 SCD patients in OMOP CDM format and this effort is to convert OMOP CDM to SCCRIP format.

https://www.stjude.org/patient-referrals/seek-treatment/taking-part-in-clinical-research/sickle-cell-clinical-research-intervention-program-sccrip.html

MIT License

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Load Synthea CSV data to OMOP CDM #2

Closed RaghaSrinivasan closed 1 year ago

RaghaSrinivasan commented 1 year ago

SyntheaTM is a synthetic patient generator that models the medical history of synthetic patients. How does SyntheaTM work? https://github.com/synthetichealth/synthea/wiki/Getting-Started

Conversion from Synthea CSV to OMOP CDM https://github.com/OHDSI/ETL-Synthea/blob/main/README.md

These instructions are intended for those just wishing to run Synthea. https://github.com/synthetichealth/synthea/wiki/Basic-Setup-and-Running

kvegesan-stjude commented 1 year ago

@RaghaSrinivasan @lindsayevanslee The data is loaded. I had to switch of the service and increase the volume sizes to load the data.