stjude / XenoCP

A cloud-based tool for mouse read cleansing in xenograft samples
Apache License 2.0
5 stars 3 forks source link

Bump action version. Update for master->main. #36

Closed adthrasher closed 1 year ago

adthrasher commented 1 year ago

Updates branch names from "master" to "main" in actions. Update GitHub action versions to the latest releases. Update Python version for miniwdl check.

Switch internal WDL imports to use relative paths. Now both miniwdl and cromwell support relative paths for all types of specifications. This will simplify things as now the import will use the corresponding tool file to whatever workflow is run.

Switch to using tagged imports from external repositories. This will prevent pulling potentially breaking changes unintentionally.