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stjude / XenoCP

A cloud-based tool for mouse read cleansing in xenograft samples
Apache License 2.0
5 stars 3 forks source link

Fixed local build. #50

Closed mcrusch closed 12 months ago

mcrusch commented 12 months ago

This included upgrading the gradle build to gradle 7, and adding the gradle wrappers.

Note: java.sh and picard had to be updated to accommodate the fact that we have a monolithic picard jar in the Docker image, but a lite picard jar with separate htsjdk for local use.