stjude / cis-x

Search for activating regulatory variants in the tumor genome
https://www.stjuderesearch.org/site/lab/zhang/cis-x
Apache License 2.0
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Error in screening candidates #8

Open zjf19870628 opened 4 years ago

zjf19870628 commented 4 years ago

In analyzing my own data set, I ran into this error:

INFO: Thu Jul 16 01:58:24 UTC 2020: cis-X-run: screening candidates /opt/cis-x/src/core/bin/cis-X-screen: line 66: 826 Aborted (core dumped) fimo --verbosity 1 --thresh 1e-3 $MOTIF $FIMO_FA_IN 2>> $LOG

looking into log file, I found this in the end:

The PSPM of motif ALX1_HUMAN.H10MO.B has probabilities which don't sum to 1 on row 12. fimo: array.c:1162: normalize_subarray: Assertion `total != 0.0' failed.