Implementing GSEA - Githubissues

stjude / proteinpaint

Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

https://proteinpaint.stjude.org/

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Implementing GSEA #1704

Closed robinpaul85 closed 3 months ago

robinpaul85 commented 3 months ago

Description

Implementing GSEA within ProteinPaint using blitzgsea.

Need to install blitzgsea python package. This can be done using pip3 install blitzgsea

For testing please use this sessions file sjmb12_GSEA.txt

TODO: 1) Need to test blitzgsea as a dependency in the docker image.

Checklist

Check each task that has been performed or verified to be not applicable.

[ ] Tests: added and/or passed unit and integration tests, or N/A
[ ] Todos: commented or documented, or N/A
[ ] Notable Changes: updated release.txt, prefixed a commit message with "fix:" or "feat:", added to an internal tracking document, or N/A