singleCell: support query and overlay gene-level exp value on clustering map - Githubissues

stjude / proteinpaint

Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

https://proteinpaint.stjude.org/

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singleCell: support query and overlay gene-level exp value on clustering map #1724

Closed xzhou82 closed 3 weeks ago

xzhou82 commented 3 weeks ago

Description

the getter at ds.queries.singleCell.geneExpression{} is added. query parameter is {sample:str, gene:str} and returns an object of gene-value pairs

need to add new route to query this e.g. routes/termdb.singlecellGeneExp.ts

need client app to show gene search box, query and retrieve data, and overlay on map of a sample

Note: without any indexing on the gene exp matrix, "grep" is introduced as a new dependency

Checklist

Check each task that has been performed or verified to be not applicable.

[ ] Tests: added and/or passed unit and integration tests, or N/A
[ ] Todos: commented or documented, or N/A
[ ] Notable Changes: updated release.txt, prefixed a commit message with "fix:" or "feat:", added to an internal tracking document, or N/A