Closed xzhou82 closed 2 weeks ago
@xzhou82 "i don't know how to auto copy it from repo to local so CI can work"
EDIT 2: this should already be handled correctly when using
server/test/serverconfig.json
, I'm testing locallyEDIT: may need to handle this as a separate symlink.
I think it should be okay to save the test msigdb file under test/tp/files/hg38/TermdbTest
, and point to that location. The symlink is already automatically created when server/dataset/termdb.test.js
is loaded, by copyDataFilesFromRepo2Tp()
in that js file
termdbs: {
msigdb: {
label: 'MSigDB',
cohort: {
db: { file: 'tp/files/hg38-test/TermdbTest/msigdb' },
termdb: {
isGeneSetTermdb: true
}
}
}
},
i moved it to test/tp/files/hg38/TermdbTest/msigdb/db
and it works. please test
Description
i have the new db file locally at
tp/anno/msigdb/termdbtest/db
and it works at termdbtest matrixtest at http://localhost:3000/?termdb={%22vocab%22:{%22dslabel%22:%22msigdb%22,%22genome%22:%22hg38-test%22}}
and matrix
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