stjude / proteinpaint

Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.
https://proteinpaint.stjude.org/
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fix: At oncomatrix, allow gene expression term to pull data on all cases #1760

Closed xzhou82 closed 1 week ago

xzhou82 commented 1 week ago

Description

please test on adhoc map with genexp already added note that the term shows exp values for 219 cases

very slow! 100 seconds. it queries gene exp data twice, each 50 seconds. first time is fillTw() getting binning. 2nd time is to pull data

in next pr may apply a hardcoded dummy default bin for gdc gene exp terms. for local ds this is not an issue and won't do this

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Check each task that has been performed or verified to be not applicable.

karishma-gangwani commented 1 week ago

I noticed (also on master) using this example link, replacing a gene exp term is not always smooth and shows some errors sometimes after replacing and trying to use some other features of the matrix.

xzhou82 commented 1 week ago

thanks i'm able to replace egfr gene exp row with myc. just have to wait 100 seconds