stjude / proteinpaint

Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.
https://proteinpaint.stjude.org/
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load singlecell gene exp data from R rds files #1772

Closed xzhou82 closed 1 week ago

xzhou82 commented 1 week ago

Description

please pull sjpp master scp one rds file from hpc:

~/data/tp/files/hg38/BALL-scrna % scp hpc:~/tp/qgao/sctransform/SJBALL030036_D1.rds geneExp

then test with a new sample

(the old one in url.html has an invalid rds file and thus gene search won't work for that)

try gene ACTB, it works. MYC has data for subset of cells. HOXA1 is not present

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