Installation failed intake_io and bioformats

[hongzhan2015]

Installation error

Thank you for this fabulous program! I tried to install punctatools on my windows using wls2 ubuntu 22.04, macOs 13 and my GPU machine running Centos 7, all failed during installing intake_io and showed error below:

---

Using cached aiohttp-3.8.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.0 MB) INFO: pip is looking at multiple versions of intake-io to determine which version is compatible with other requirements. This could take a while. ERROR: Ignored the following versions that require a different python version: 0.52.0 Requires-Python >=3.6,<3.9; 0.52.0rc3 Requires-Python >=3.6,<3.9 ERROR: Could not find a version that satisfies the requirement bioformats (from intake-io) (from versions: none) ERROR: No matching distribution found for bioformats

[hongzhan2015]

Dear all,

I was able to use the latest .yml file, by adding channel biochonda and using python 3.8.4, which overcomes my issue.

---

name: punctatools channels:

• conda-forge
• defaults
• bioconda dependencies:
• python==3.8.4
• ipykernel
• scipy
• ddt
• pytest
• tqdm
• scikit-image
• pandas
• seaborn
• bokeh<2.5.0,>=2.4.0
• holoviews
• jupyter
• pyvcf
• git
• bioformats
• cellpose
• pip
• pip:
  • cellpose
  • git+https://github.com/amedyukhina/am_utils.git
  • git+https://github.com/bhoeckendorf/intake_io.git@v0.0.2
  • git+https://github.com/stjude/punctatools.git@v0.2.0

---

Hong

[kdong73]

Hello,

I am getting the same error as hongzhan2015 got originally. I tried their solution, but got the same error: ERROR: Could not find a version that satisfies the requirement bioformats (from intake-io) (from versions: none) ERROR: No matching distribution found for bioformats

Is there anything else anyone might suggest to fix this?

Thanks

[hongzhan2015]

Hi there,

Are you using Mac OS using M1/M2 chips? I found it does not work on ARM architecture.

Hong