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stjude / punctatools

Detection, colocalization, and quantification of spots / puncta
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ERROR: Could not find a version that satisfies the requirement bioformats (from intake-io) (from versions: none) ERROR: No matching distribution found for bioformats #34

Open MichelleKMS opened 11 months ago

MichelleKMS commented 11 months ago

🐛 Bug

To Reproduce

Steps to reproduce the behavior: Capture

1. 2. 3.

Expected behavior

Environment

Additional context

nestorsaiz commented 11 months ago

I am finding the same issue when trying to install intake_io. I'm using python 3.9 on the conda environment and a MacBook Pro M1, with the ARM installation of anaconda. Is this a problem?

MichelleKMS commented 11 months ago

I use python 3.8 and install each required package with conda install/conda install-c conda-forge, and it works. I am using Window though.

1. conda create -n test2punctatools python=3.8

2. conda activate test2punctatools

3. conda install -c anaconda ipykernel

4. conda install -c anaconda scipy

5. conda install -c conda-forge ddt

6. conda install -c anaconda pytest

7. conda install -c conda-forge tqdm

8. conda install -c anaconda scikit-image

9. conda install pandas

10. conda install -c anaconda seaborn

11. conda install -c bokeh bokeh==2.4

12. conda install -c conda-forge holoviews

13. conda install -c anaconda jupyter

14. conda install -c conda-forge pyvcf

15. conda install -c anaconda git

16. conda install -c bioconda bioformats

17. conda install -c conda-forge cellpose

18. conda install -c anaconda pip

19. pip install cellpose

20. pip install git+https://github.com/amedyukhina/am_utils.git

21. pip install git+https://github.com/bhoeckendorf/intake_io.git@v0.0.2

22. pip install git+https://github.com/stjude/punctatools.git@v0.2.0