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stjudecloud / workflows

Bioinformatics workflows developed for and used on the St. Jude Cloud project.
MIT License
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feat: multiqc configs #143

Closed a-frantz closed 3 months ago

a-frantz commented 5 months ago

A bunch of changes inspired by conversations with David F.

Eventually we want to add a bunch of lines similar to:

custom_plot_config:
  mosdepth-cumcoverage-dist-id:
    title: "Cumulative coverage distribution (whole_genome)"
  mosdepth-cumcoverage-dist-id-1:
    title: "Cumulative coverage distribution (exon)"
  mosdepth-cumcoverage-dist-id-2:
    title: "Cumulative coverage distribution (CDS)"
  mosdepth-cumcoverage-dist-id-3:
    title: "Cumulative coverage distribution (UTR)"
  mosdepth-cumcoverage-dist-id-4:
    title: "Cumulative coverage distribution (whole_genome, markdups)"
  mosdepth-cumcoverage-dist-id-5:
    title: "Cumulative coverage distribution (exon, markdups)"
  mosdepth-cumcoverage-dist-id-6:
    title: "Cumulative coverage distribution (CDS, markdups)"
  mosdepth-cumcoverage-dist-id-7:
    title: "Cumulative coverage distribution (UTR, markdups)"

However, this config option is currently bugged in MultiQC.