v1.3.0

[jhollway]

Description

Package

• Improved user information in the console
  • manynet cli functions now inherit parent frame
  • Added manynet cli functions for success and progress along, seq, and nodes
• Improved testing architecture
  • Moving to nested testthats
  • Added custom testthat function for expecting values and ignoring dimension names

Making

• Added some names to created networks (create_ego(), create_empty(), create_filled(), create_ring(), create_star(), create_lattice())

Modifying

• Fixed how as_matrix() handles signed networks
• Added as_nodelist() for extracting nodelists from networks into tibbles
• Added to_cosine()
• Dropped to_galois() until it can be refactored
• Split reformatting documentation into format, reformat, and deformat groups of functions
  • Added to_signed() for adding signs to networks
  • Added to_weighted() for adding weights to networks

Mapping

• Fixed default color ordering so that red is the highlight
• Fixed bug in graphr() where line types were inferred incorrectly
• Improved graphr() so that layouts can now be snapped to a grid, mileage may vary
• Improved theme handling so that it is set globally (WIP)
  • Added highlight themes
  • Added background themes
  • Added categorical themes
• Improved configurational layouts
  • Added dyad, pentad, and hexad layouts to configurational layouts
  • Renamed quad layout to tetrad layout

Marking

• Added node_is_pendant() for identifying pendant nodes
• Added node_is_neighbor() for identifying adjacent nodes
• Added tie_is_imbalanced() for identifying ties in imbalanced configurations

Measuring

• Added summary.network_measure() to return z-scores and p-values for measures
• Added node_vitality() for measuring closeness vitality centrality
• Fixed #98 by dropping scale and normalization for node_eigenvector()

Memberships

• Improved community detection options for new users
  • Community detection algorithms now reformat networks as necessary or suggest that it be used on only the giant component
  • Added node_in_community() which runs through most salient community detection algorithms to find and return the one with the highest modularity
  • Updated documentation on resolution parameters
• Improved node_in_regular() to inform user which census is being used
• Renamed node_by_quad() to node_by_tetrad() to be more consistent with Greek origins
  • Restored and updated documentation about the various configurations
• Added summary.network_motif() which returns the z-scores for the motif scores based on random or configurational networks, traces progress
• Fixed bug in plot.network_motif() where motif names were not identified correctly, internal make_network_motif now inherits call information

Modelling

• Added cluster_cosine() for another equivalence option
• Added internal documentation for depth_first_recursive_search

Practicing

• Improved how run_tute() fuzzy matched so that insertions are not as costly
• Improved tutorials with glossary architecture
  • Added gloss(), clear_glossary(), and print_glossary() for adding glossaries to tutorials
• Updated tutorials
  • Updated community, position, and topology tutorials with glossaries, free play sections, and gifs
  • Fixed miscellaneous issues in these tutorials
  • Added faction section to community tutorial

Data

• Added irps_wwi, a dynamic, signed network
• Renamed ison_blogs to irps_blogs, added info
• Renamed ison_books to irps_books, added info
• Renamed ison_usstates to irps_usgeo, added info
• Renamed ison_friends to fict_friends, added info and fixed directed issue
• Renamed ison_greys to fict_greys, added info
• Renamed ison_lotr to fict_lotr, added info
• Renamed ison_thrones to fict_thrones, added info and some additional nodal attributes

Checklist:

• PR form
  • [ ] Description above itemizes changes under subtitles, e.g. "## Data""
  • [ ] Any closed, fixed, or related issues are referenced and explained in the description above, e.g. "Fixed #0 by adding A"
  • [ ] Package builds on my OS without issues
• PR checks all pass for latest commit
  • [ ] CodeFactor check: Package improves or maintains good style
  • [ ] Package builds on Mac
  • [ ] Package builds on Windows
  • [ ] Package builds on Linux
  • [ ] CodeCov check: Package improves or maintains good test coverage
• Documentation
  • [ ] Any new or modified functions or data have roxygen style documentation in their .R scripts
  • [ ] Longer functions are commented inline or broken down into helper functions so that it is easier to debug in the future
  • [ ] PR description above and the NEWS.md file are aligned
  • [ ] DESCRIPTION file version is bumped by the appropriate increment (major, minor, patch)