Added partition layouts and theme #patch

[henriquesposito]

Package

• Closed #4 by adding thisRequiresBio() helper function to download Bioconductor packages
• Upgraded ison data to latest igraph specification
  • Added ison_konigsberg for illustrating Seven Bridges of Konigsberg
  • Removed ison_brandes2 and added potential modal type as extra variable to ison_brandes
  • Consolidated ison_bb, ison_bm, ison_mb, and ison_mm into a list of networks called ison_laterals

Make

• Added create_explicit() for creating networks based on explicit nodes and ties

Manip

• Added delete_nodes() for deleting specific nodes
• Added to_eulerian() function that returns a Eulerian path network, if available, from a given network

Map

• Moved additional is_ functions from {migraph}
  • Added is_connected() to test if network is strongly connected
  • Added is_perfect_matching() to test if there is a matching for every node in the network
  • Added is_eulerian() to test whether there is a Eulerian path for a network
  • Added is_acyclic to test whether network is a directed acyclic graph
  • Added is_aperiodic to test whether network is aperiodic
• Added partition layouts
  • Added layout_tbl_graph_alluvial() that places successive layers horizontally
  • Added layout_tbl_graph_concentric()that places a "hierarchy" layout around a circle
  • Added layout_tbl_graph_hierarchy() that layers the nodes along the top and bottom sequenced to minimise overlap
  • Added layout_tbl_graph_ladder()that aligns nodes across successive layers horizontally
  • Added layout_tbl_graph_railway that aligns nodes across successive layers vertically
• Added theme_iheid() function that themes graphs with colors based on the Geneva Graduate Institute

Checklist:

• PR form
  • [x] Description above itemizes changes under subtitles, e.g. "## Data""
  • [x] Any closed, fixed, or related issues are referenced and explained in the description above, e.g. "Fixed #0 by adding A"
  • [x] Package builds on my OS without issues
• PR checks all pass for latest commit
  • [ ] CodeFactor check: Package improves or maintains good style
  • [x] Package builds on Mac
  • [x] Package builds on Windows
  • [x] Package builds on Linux
  • [ ] CodeCov check: Package improves or maintains good test coverage
• Documentation
  • [x] Any new or modified functions or data have roxygen style documentation in their .R scripts
  • [x] Longer functions are commented inline or broken down into helper functions so that it is easier to debug in the future
  • [x] PR description above and the NEWS.md file are aligned
  • [x] DESCRIPTION file version is bumped by the appropriate increment (major, minor, patch)

[codecov[bot]]

Codecov Report

Merging #16 (d9ada6d) into main (b086a9b) will decrease coverage by 0.56%. Report is 2 commits behind head on main. The diff coverage is 41.78%.

:exclamation: Current head d9ada6d differs from pull request most recent head 350a96b. Consider uploading reports for the commit 350a96b to get more accurate results

@@            Coverage Diff             @@
##             main      #16      +/-   ##
==========================================
- Coverage   54.46%   53.91%   -0.56%     
==========================================
  Files          16       20       +4     
  Lines        2047     2274     +227     
==========================================
+ Hits         1115     1226     +111     
- Misses        932     1048     +116     

Files Changed	Coverage Δ
R/make_generate.R	53.01% <ø> (ø)
R/manip_reformat.R	66.11% <ø> (+1.11%)	:arrow_up:
R/manip_split.R	53.93% <ø> (ø)
R/map_palettes.R	0.00% <0.00%> (ø)
R/map_theme.R	0.00% <0.00%> (ø)
R/manynet-utils.R	10.52% <10.52%> (ø)
R/map_layout_partition.R	11.11% <11.11%> (ø)
R/make_as.R	49.42% <50.00%> (+2.23%)	:arrow_up:
R/make_read.R	66.24% <50.00%> (+3.18%)	:arrow_up:
R/manip_transform.R	66.45% <61.53%> (-0.45%)	:arrow_down:
... and 4 more

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