v0.3.0

[jaeltan]

Description

2023-12-15

Package

• Overhaul of the README to summarise many of the unique aspects of the package

Making

• Added as_tidygraph() method for diff_model objects
• Added as_siena() method for tidygraph objects

Modifying

• Manipulating functions now called Modifying
• to_waves() now works on diff_model objects, add attributes and names
• is_multiplex() now recognises a tie/edge 'type' attribute as evidence of multiplexity
• Deleted unnecessary reexports from other packages
  • igraph::is_bipartite() is superseded by is_twomode()
  • tidygraph::activate() is superseded by mutate_ties() and similar functions
• Fixed bug by replacing older igraph::as_incidence_matrix() and igraph::graph_from_incidence_matrix() with igraph::as_biadjacency_matrix() and igraph::graph_from_biadjacency_matrix()

Mapping

• autographr() now plots diff_model objects, showing the diffusion as a heatmap on the vertices
• autographs() and autographd() now utilise network information in diff_model objects to provide better layouts
• Fixed bug with specifying node_size in autographd()
• many_palettes replaces iheid_palette
• Added new palettes, themes and scales for graphs
  • theme_ethz(), scale_color_ethz()/scale_colour_ethz(), and scale_fill_ethz() for ETH Zürich
  • theme_uzh(), scale_color_uzh()/scale_colour_uzh(), and scale_fill_uzh() for Uni Zürich
  • theme_rug(), scale_color_rug()/scale_colour_rug(), and scale_fill_rug() for Uni Gröningen

Data

• Added ison_physicians data that includes four, multiplex networks with adoption data

Checklist:

• PR form
  • [x] Description above itemizes changes under subtitles, e.g. "## Data""
  • [x] Any closed, fixed, or related issues are referenced and explained in the description above, e.g. "Fixed #0 by adding A"
  • [x] Package builds on my OS without issues
• PR checks all pass for latest commit
  • [x] CodeFactor check: Package improves or maintains good style
  • [x] Package builds on Mac
  • [x] Package builds on Windows
  • [x] Package builds on Linux
  • [ ] CodeCov check: Package improves or maintains good test coverage
• Documentation
  • [x] Any new or modified functions or data have roxygen style documentation in their .R scripts
  • [x] Longer functions are commented inline or broken down into helper functions so that it is easier to debug in the future
  • [x] PR description above and the NEWS.md file are aligned
  • [x] DESCRIPTION file version is bumped by the appropriate increment (major, minor, patch)

[codecov[bot]]

Codecov Report

Attention: 208 lines in your changes are missing coverage. Please review.

Comparison is base (59737e7) 50.49% compared to head (e6ecdf1) 55.19%. Report is 17 commits behind head on main.

:exclamation: Current head e6ecdf1 differs from pull request most recent head 0f69f65. Consider uploading reports for the commit 0f69f65 to get more accurate results

Files	Patch %	Lines
R/map_autographr.R	12.23%	122 Missing :warning:
R/map_theme.R	71.42%	60 Missing :warning:
R/make_as.R	38.46%	8 Missing :warning:
R/manip_split.R	0.00%	7 Missing :warning:
R/map_palettes.R	0.00%	7 Missing :warning:
R/map_is.R	50.00%	2 Missing :warning:
R/manip_tidy.R	85.71%	1 Missing :warning:
R/manip_transform.R	50.00%	1 Missing :warning:

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #35 +/- ## ========================================== + Coverage 50.49% 55.19% +4.69% ========================================== Files 22 22 Lines 2810 2957 +147 ========================================== + Hits 1419 1632 +213 + Misses 1391 1325 -66 ```

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