Open 1qq12 opened 3 years ago
stranskyjan
commented
3 years ago Hello,
what is your operating system?
CMake Error at /usr/share/cmake-3.10/Modules/FindBoost.cmake:1947 (message): Unable to find the requested Boost libraries.
CMake Error: The following variables are used in this project, but they are set to NOTFOUND.
the main problem seems to be here.
What is the output of terminal command apt list *boost*?
Cheers Jan
1qq12
commented
3 years ago Jan, thank you so much for your very patient guidance! My operating system is Ubuntu 18.04.5 LTS (Bionic Beaver). Following your answer, I got the following output after typing apt list boost in terminal.
output.txt Thanks a lot！！ xue
stranskyjan
commented
3 years ago Should work on Ubuntu 18.04 LTS (I am using the same system).
Do you know how you installed boost libraries?
What is the output of dpkg -L libboost-python-dev?
1qq12
commented
3 years ago Hello jan, thank you for your guidance. As you suggested, I checked and found that I did not install libboost-python-dev. so I subsequently installed it. After running the makefile again, it can complete the installation of oofem. But there was a problem again when the program was installing yade.
rm -rf /home/com/dem-fem-coupling-master/installation/_build/yade/source-orig wget https://launchpad.net/yade/trunk/yade-1.00.0/+download/yade_2019.01a.tar.bz2 -O /home/com/dem-fem-coupling-master/installation/_build/yade/yade.tar.bz2 --2021-10-19 17:06:33-- https://launchpad.net/yade/trunk/yade-1.00.0/+download/yade_2019.01a.tar.bz2 正在解析主机 launchpad.net (launchpad.net)... 91.189.89.222, 91.189.89.223, 2001:67c:1560:8003::8004, ... 正在连接 launchpad.net (launchpad.net)|91.189.89.222|:443... 已连接。 已发出 HTTP 请求，正在等待回应... 303 See Other 位置：https://launchpadlibrarian.net/408954510/yade_2019.01a.tar.bz2 [跟随至新的 URL] --2021-10-19 17:06:38-- https://launchpadlibrarian.net/408954510/yade_2019.01a.tar.bz2 正在解析主机 launchpadlibrarian.net (launchpadlibrarian.net)... 91.189.89.229, 91.189.89.228, 2001:67c:1560:8003::8008, ... 正在连接 launchpadlibrarian.net (launchpadlibrarian.net)|91.189.89.229|:443... 已连接。 已发出 HTTP 请求，正在等待回应... 200 OK 长度： 6244563 (6.0M) [application/x-tar] 正在保存至: “/home/com/dem-fem-coupling-master/installation/_build/yade/yade.tar.bz2”
/home/com/dem-fem-c 100%[===================>] 5.96M 535KB/s 用时 15s
2021-10-19 17:06:58 (419 KB/s) - 已保存 “/home/com/dem-fem-coupling-master/installation/_build/yade/yade.tar.bz2” [6244563/6244563])
tar xfj /home/com/dem-fem-coupling-master/installation/_build/yade/yade.tar.bz2 mv trunk-2019.01a /home/com/dem-fem-coupling-master/installation/_build/yade/source-orig rm -rf /home/com/dem-fem-coupling-master/installation/_build/yade/source cp -r /home/com/dem-fem-coupling-master/installation/_build/yade/source-orig /home/com/dem-fem-coupling-master/installation/_build/yade/source cd /home/com/dem-fem-coupling-master/installation/_build/yade/source && \ patch -s -p0 < /home/com/dem-fem-coupling-master/installation/yade.diff mkdir -p /home/com/dem-fem-coupling-master/installation/_build/yade/build cd /home/com/dem-fem-coupling-master/installation/_build/yade/build && \ cmake \ -DCMAKE_INSTALL_PREFIX=/home/com/dem-fem-coupling-master/installation/_build/yade/install \ -DENABLE_LINSOLV=OFF \ -DENABLE_PFVFLOW=OFF \ -DENABLE_LBMFLOW=OFF \ -DENABLE_TWOPHASEFLOW=OFF \ -DENABLE_GL2PS=OFF \ -DNOSUFFIX=ON \ /home/com/dem-fem-coupling-master/installation/_build/yade/source -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:33 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake.
Update the VERSION argument
-- Found PythonInterp: /usr/bin/python (found version "2.7.17")
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
qmake: could not exec '/usr/lib/x86_64-linux-gnu/qt4/bin/qmake': No such file or directory
-- Found unsuitable Qt version "" from NOTFOUND
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
-- Version is set to 2019.01a
-- Could NOT find OpenGL (missing: OPENGL_opengl_LIBRARY OPENGL_glx_LIBRARY OPENGL_INCLUDE_DIR)
-- GTS using gts-config /usr/bin/gts-config
-- Using GTS from /usr
-- Could NOT find GL2PS (missing: GL2PS_LIBRARY GL2PS_INCLUDE_DIR)
-- CGAL not found.
-- Found NumPy: version "1.13.3" /usr/lib/python2.7/dist-packages/numpy/core/include
-- Could NOT find Loki (missing: LOKI_INCLUDE_DIR LOKI_LIBRARY)
-- GCC Version >= 4.8. Adding -ftrack-macro-expansion=0
-- GCC Version >= 4.8. Adding -save-temps
-- GCC Version >= 4.9. Adding -fstack-protector-strong
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
CMake Error at /usr/local/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:230 (message):
Could NOT find Boost (missing: thread filesystem iostreams regex
serialization system date_time) (found suitable version "1.65.1", minimum
required is "1.47.0")
Call Stack (most recent call first):
/usr/local/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:594 (_FPHSA_FAILURE_MESSAGE)
/usr/local/share/cmake-3.21/Modules/FindBoost.cmake:2360 (find_package_handle_standard_args)
CMakeLists.txt:102 (FIND_PACKAGE)
-- Configuring incomplete, errors occurred! See also "/home/com/dem-fem-coupling-master/installation/_build/yade/build/CMakeFiles/CMakeOutput.log". See also "/home/com/dem-fem-coupling-master/installation/_build/yade/build/CMakeFiles/CMakeError.log". Makefile:149: recipe for target 'yade-cmake' failed make: *** [yade-cmake] Error 1
What could be the cause of this? I look forward to your answer. xue
1qq12
commented
3 years ago Here are the error file and output file generated by cmake CMakeOutput.log CMakeError.log
.
stranskyjan
commented
3 years ago Could NOT find Boost (missing: thread filesystem iostreams regex serialization system date_time) (found suitable version "1.65.1", minimum required is "1.47.0")
install missing boost libraries: thread, filesystem, iostreams, regex, serialization, system, date_time e.g. for "iostreams" it is libbost-iostreams-dev
Cheers Jan
Hi, Jan： When I install fem-dem coupling, I use the make all command. Based on the answer in (https://github.com/stranskyjan/dem-fem-coupling/issues/21), I installed python2 versions with the following code:
sudo apt install python-dev python-ipython python-numpy python-tk python-xlib python-pyqt5 python-minieigen python-pyqt5.qtwebkit python-gts
However I still got the following error: mkdir -p /home/dadn/dem-fem-coupling-master/installation/_build/oofem mkdir -p /home/dadn/dem-fem-coupling-master/installation/_build/yade mkdir -p /home/dadn/dem-fem-coupling-master/installation/_build/install rm -rf /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source-orig wget http://www.oofem.org/cgi-bin/OOFEM/download.cgi?download=oofem-2.5.zip -O /home/dadn/dem-fem-coupling-master/installation/_build/oofem/oofem.zip --2021-07-13 13:54:40-- http://www.oofem.org/cgi-bin/OOFEM/download.cgi?download=oofem-2.5.zip 正在解析主机 www.oofem.org (www.oofem.org)... 147.32.130.71 正在连接 www.oofem.org (www.oofem.org)|147.32.130.71|:80... 已连接。 已发出 HTTP 请求，正在等待回应... 302 Found 位置：http://www.oofem.org/download/oofem-2.5.zip [跟随至新的 URL] --2021-07-13 13:54:47-- http://www.oofem.org/download/oofem-2.5.zip 再次使用存在的到 www.oofem.org:80 的连接。 已发出 HTTP 请求，正在等待回应... 200 OK 长度： 14249792 (14M) [application/zip] 正在保存至: “/home/dadn/dem-fem-coupling-master/installation/_build/oofem/oofem.zip”
/home/dadn/dem-fem- 100%[===================>] 13.59M 1.72MB/s 用时 14s
2021-07-13 13:55:02 (968 KB/s) - 已保存 “/home/dadn/dem-fem-coupling-master/installation/_build/oofem/oofem.zip” [14249792/14249792])
unzip -q -o /home/dadn/dem-fem-coupling-master/installation/_build/oofem/oofem.zip mv oofem-2.5 /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source-orig rm -rf /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source cp -r /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source-orig /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source cd /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source && patch -s -p0 < /home/dadn/dem-fem-coupling-master/installation/oofem.diff mkdir -p /home/dadn/dem-fem-coupling-master/installation/_build/oofem/build cd /home/dadn/dem-fem-coupling-master/installation/_build/oofem/build && cmake -DUSE_PYTHON_BINDINGS=ON /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source -- The CXX compiler identification is GNU 7.5.0 -- The C compiler identification is GNU 7.5.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Found PythonInterp: /usr/bin/python2.7 (found suitable version "2.7.17", minimum required is "2.7") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found suitable version "2.7.17", minimum required is "2.7") CMake Warning at /usr/share/cmake-3.10/Modules/FindBoost.cmake:567 (message): Imported targets and dependency information not available for Boost version (all versions older than 1.33) Call Stack (most recent call first): /usr/share/cmake-3.10/Modules/FindBoost.cmake:907 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.10/Modules/FindBoost.cmake:1558 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:507 (find_package)
CMake Warning at /usr/share/cmake-3.10/Modules/FindBoost.cmake:1626 (message): No header defined for python-py27; skipping header check Call Stack (most recent call first): CMakeLists.txt:507 (find_package)
CMake Error at /usr/share/cmake-3.10/Modules/FindBoost.cmake:1947 (message): Unable to find the requested Boost libraries.
Unable to find the Boost header files. Please set BOOST_ROOT to the root directory containing Boost or BOOST_INCLUDEDIR to the directory containing Boost's headers. Call Stack (most recent call first): CMakeLists.txt:507 (find_package)
-- Looking for C++ include unistd.h -- Looking for C++ include unistd.h - found -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Looking for access -- Looking for access - found -- Looking for cbrt -- Looking for cbrt - found -- Looking for isnan -- Looking for isnan - not found -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) CMake Error: The following variables are used in this project, but they are set to NOTFOUND. Please set them or make sure they are set and tested correctly in the CMake files: Boost_INCLUDE_DIR (ADVANCED) used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/oofemlib used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/oofemlib used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/oofemlib used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/oofemlib used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/oofemlib used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/oofemlib used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/oofemlib used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/oofemlib used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/oofemlib used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/oofemlib used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/sm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/sm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/sm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/sm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/sm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/sm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/sm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/sm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/sm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/sm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/tm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/tm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/tm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/tm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/tm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/tm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/tm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/tm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/tm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/tm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/fm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/fm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/fm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/fm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/fm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/fm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/fm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/fm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/fm used as include directory in directory /home/dadn/dem-fem-coupling-master/installation/_build/oofem/source/src/fm
-- Configuring incomplete, errors occurred! See also "/home/dadn/dem-fem-coupling-master/installation/_build/oofem/build/CMakeFiles/CMakeOutput.log". See also "/home/dadn/dem-fem-coupling-master/installation/_build/oofem/build/CMakeFiles/CMakeError.log". Makefile:119: recipe for target 'oofem-cmake' failed make: *** [oofem-cmake] Error 1 I also got the CMakeOutput.log and CMakeError.log.
CMakeOutput.log CMakeError.log
So，what should I do next ？ Thanks a lot！！ xue