Closed mmahlke closed 2 months ago
For plot browser commands, I've suddenly been given this error. Ideas how to resolve?
dm.plot_browser("/path/to/file.bam", "prot", "chrm:coord-range", "A", "/path/to/out", colorA='#cc322f', threshA=205, smooth=5000, dotsize=2, static=True) Traceback (most recent call last): File "", line 1, in File "/.conda/envs/dimelo/lib/python3.7/site-packages/dimelo/plot_browser.py", line 197, in plot_browser cores=num_cores, File "/.conda/envs/dimelo/lib/python3.7/site-packages/dimelo/parse_bam.py", line 284, in parse_bam make_db(fileName, sampleName, outDir) File "/.conda/envs/dimelo/lib/python3.7/site-packages/dimelo/parse_bam.py", line 154, in make_db create_sql_table(DATABASE_NAME, table_name, cols, dtypes) File "/.conda/envs/dimelo/lib/python3.7/site-packages/dimelo/utils.py", line 31, in create_sql_table c.execute("""DROP TABLE IF EXISTS """ + table_name + """;""") sqlite3.OperationalError: near "-": syntax error
For plot browser commands, I've suddenly been given this error. Ideas how to resolve?