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streetslab / dimelo

python package for analysis of dimelo-seq & nanopore modified base data
MIT License
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pytest warnings #39

Open OberonDixon opened 1 year ago

OberonDixon commented 1 year ago

Installed in dev mode on the Savio cluster at Berkeley and saw the following outputs from the pytest run of dimelo_test.py:

(dimelo_arbitrary_basemod_dev) [dixonluinenburg@ln001 dimelo]$ pytest ============================= test session starts ============================== platform linux -- Python 3.7.11, pytest-6.2.4, py-1.11.0, pluggy-0.13.1 rootdir: /clusterfs/nilah/oberon/dimelo_dev_source/dimelo plugins: anyio-3.7.0 collected 17 items

dimelo/test/dimelo_test.py ................. [100%]

=============================== warnings summary =============================== ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/matplotlib/init.py:152 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/matplotlib/init.py:152 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/matplotlib/init.py:152 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/matplotlib/init.py:152 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/matplotlib/init.py:152 /clusterfs/nilah/oberon/dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/matplotlib/init.py:152: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(module.version) < minver:

../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/setuptools/_distutils/version.py:345 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/setuptools/_distutils/version.py:345 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/setuptools/_distutils/version.py:345 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/setuptools/_distutils/version.py:345 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/setuptools/_distutils/version.py:345 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/setuptools/_distutils/version.py:345 /clusterfs/nilah/oberon/dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/setuptools/_distutils/version.py:345: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. other = LooseVersion(other)

../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/pkg_resources/init.py:121 /clusterfs/nilah/oberon/dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/pkg_resources/init.py:121: DeprecationWarning: pkg_resources is deprecated as an API warnings.warn("pkg_resources is deprecated as an API", DeprecationWarning)

../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/pkg_resources/init.py:2870 /clusterfs/nilah/oberon/dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/pkg_resources/init.py:2870: DeprecationWarning: Deprecated call to pkg_resources.declare_namespace('mpl_toolkits'). Implementing implicit namespace packages (as specified in PEP 420) is preferred to pkg_resources.declare_namespace. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg)

../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/pkg_resources/init.py:2870 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/pkg_resources/init.py:2870 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/pkg_resources/init.py:2870 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/pkg_resources/init.py:2870 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/pkg_resources/init.py:2870 ../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/pkg_resources/init.py:2870 /clusterfs/nilah/oberon/dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/pkg_resources/init.py:2870: DeprecationWarning: Deprecated call to pkg_resources.declare_namespace('sphinxcontrib'). Implementing implicit namespace packages (as specified in PEP 420) is preferred to pkg_resources.declare_namespace. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg)

../../dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/seaborn/rcmod.py:82 /clusterfs/nilah/oberon/dimelo_arbitrary_basemod_dev/lib/python3.7/site-packages/seaborn/rcmod.py:82: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(mpl.version) >= "3.0":

-- Docs: https://docs.pytest.org/en/stable/warnings.html ================== 17 passed, 20 warnings in 74.14s (0:01:14) ==================