search

streptomyces / ripper

Searching for precursor peptide genes for ribosomally synthesized and post-translationally modified peptides (RiPPs).
8 stars 2 forks source link

Query about prodigal-short #6

Open wanqiangdehuoguo opened 8 months ago

wanqiangdehuoguo commented 8 months ago

Hi, I have a question about using prodigal-short. The fellowing step i have been done:

First, use singularity pull ripper.sif docker://streptomyces/ripdock to download the image. Next run: git clone https://github.com/streptomyces/ripper.git Finally run singularity shell ~/ripper.sif i want to run prodigal-short in the container shell.

But i find there are two prodigal can be use:

  1. There is a prodigal in container shell environment $PATH
  2. There is a prodigal-short in repository from github

So, my question is what is the real prodigal-short you description in Readme section Building prodigal-short？ If the prodigal-short in repository from github is can use directly, should i use container to run?

Hope you can anwer this, i am really appreciate it.