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stschiff / msmc-tools

Tools and Utilities for msmc and msmc2
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Problem loading page for mappability masks #23

Closed mmaalvarez closed 4 years ago

mmaalvarez commented 6 years ago

Hi there, the link in this paragraph doesn't work:

In addition to the mask- and vcf file for each individual, you should use one additional mask per chromosome, the mappability mask, which gives all regions on the chromosome, on which short sequencing reads can be uniquely mapped. For humans (GRCh37), you can download these masks here.

Could you please provide al alternative source?

Thanks, regards

stschiff commented 6 years ago

Strange… for me the link works. Try this:

https://oc.gnz.mpg.de/owncloud/index.php/s/RNQAkHcNiXZz2fd https://oc.gnz.mpg.de/owncloud/index.php/s/RNQAkHcNiXZz2fd

Best, Stephan

On 4 Jun 2018, at 15:16, mmaalvarez notifications@github.com wrote:

Hi there, the link in this paragraph doesn't work:

In addition to the mask- and vcf file for each individual, you should use one additional mask per chromosome, the mappability mask, which gives all regions on the chromosome, on which short sequencing reads can be uniquely mapped. For humans (GRCh37), you can download these masks here.

Could you please provide al alternative source?

Thanks, regards

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mmaalvarez commented 6 years ago

Thank you, actually the first link works, the problem was my web browser (I am using Firefox). Using the Microsoft Internet Explorer I can access the files without any problem.

Thanks,

Miguel

QianXiaobo commented 4 years ago

Hi Stschiff, I cannot link to https://oc.gnz.mpg.de/owncloud/index.php/s/RNQAkHcNiXZz2fd any more, does it disabled? I am not sure whether I am in China so that I cannot connect it. I am new in this field, if the size of mappability mask file is not large, could you send it to me (qianxiaobo@genomics.cn) please? or any where you can upload and tell me the website. Thanks for your gentle.

Best wishes, Xiaobo Qian

stschiff commented 4 years ago

I've updated the package to point to the correct location.