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stschiff / msmc-tools

Tools and Utilities for msmc and msmc2
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error in bamCaller.py #41

Closed YueqiTao closed 2 years ago

YueqiTao commented 2 years ago

Hi!

There is an error in my log file when run bamCaller.py.

Traceback (most recent call last): File "/ebio/abt6/ytao/software/msmc-tools/bamCaller.py", line 36, in assert fields[0] == chr_, "found multiple chromosomes" AssertionError: found multiple chromosomes

Could you please help me to solve it? Many thanks!

Best regards, Yueqi

stschiff commented 2 years ago

This script is very old and I don't actively maintain it anymore (it's python, so I expect people to just take it as a script and adapt to their needs). But for what it's worth: In MSMC I generally assume you're processing a single chromosome at a time. Please check the script and your input to debug. Thanks.