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stschiff / msmc

Implementation of the multiple sequential markovian coalescent
GNU General Public License v3.0
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remove repeatmask region #26

Closed wlz0726 closed 7 years ago

wlz0726 commented 7 years ago

Hi Stephan,

I'm wondering if the results make sense when I remove repeatmask region to reduce the memory consumption and running time. I mainly want to estimate the relative cross coalescence rate. The results changed a little bit the postion of rccr=0.5.

test plot: masked (orange) vs default (green) image

best lizhong

stschiff commented 7 years ago

Dear Lizhong,

if you have followed my recommended processing, you should have used a mappability mask that should have masked out repeat-regions anyway.

Stephan

On 27 Dec 2016, at 06:44, Lizhong Wang notifications@github.com wrote:

Hi Stephan,

I'm wondering if the results make sense when I remove repeatmask region to reduce the memory consumption and running time. I mainly want to estimate the relative cross coalescence rate. The results changed a little bit the postion of rccr=0.5.

test plot: masked (orange) vs default (green) https://camo.githubusercontent.com/5b6901418dcc4062c5684f078ce4ccb24c6bef52/687474703a2f2f6f66723976696f75672e626b742e636c6f7564646e2e636f6d2f515132303136313232372d302e706e673f696d616765566965772f322f772f353030 best lizhong

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wlz0726 commented 7 years ago

Thanks for your reply.