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stschiff / msmc2

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number haplotypes #31

Closed kmanoharan01 closed 3 years ago

kmanoharan01 commented 3 years ago

Hi

Just wondering what is the Maximum number of haplotypes we can use for divergence time in msmc and msmc2?

Thanks, Mano

stschiff commented 3 years ago

In MSMC2 it's limited by computational time only. We have tried 8 vs 8 haplotypes, so 16 in total, which took several days to complete, I think. In MSMC you shouldn't go beyond 4 and 4, so 8 in total.

kmanoharan01 commented 3 years ago

Thank you.