Closed carversh closed 1 year ago
The standard irlba function works on the data matrix when nv = 50, but it's hard to see what it is set to in Seurat.
By default, RunSVD uses the variable features for the assay. Since you haven't run FindTopFeatures()
this would be an empty vector. You should run FindTopFeatures()
or set the features
parameter in RunSVD()
Hi, I'm analyzing ATAC seq data and running into a dimensionality issue. Help would be greatly appreciated!:
When running RunSVD I get the following error:
The dimensionality of my data is: