scRNAseq data import without .h5 file

stuart-lab / signac

R toolkit for the analysis of single-cell chromatin data

https://stuartlab.org/signac/

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scRNAseq data import without .h5 file #1663

Closed BartBryant closed 6 months ago

BartBryant commented 6 months ago

hello signac

I have multiome (scATACseq and scRNAseq) data and your tutorials use the .h5 file. Can we use the three files (barcodes, matrix, features) instead? If so, how?

thx barT

timoast commented 6 months ago

Please see the section "What if I don’t have an H5 file?" in the PBMC vignette