stuart-lab / signac

R toolkit for the analysis of single-cell chromatin data
https://stuartlab.org/signac/
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Integration scATAC with scRNAseq not multiomic #1715

Closed yamihn closed 5 months ago

yamihn commented 5 months ago

Hi @timoast , I have 4 scATAC fragments (2ko and 2wt) and I would to process and integrate with 4 scRNAseq (2ko and 2wt) from the same experiment but NOT MULTIOMIC Conditions correspond but the cells seems to be differents. (I don't find scRNA Cell names in the respective scATAC fragment). Which kind how approach do you suggest to me? I am not sure if I can integrate not multiomic sample. Best Olga