Open umutcakir opened 4 months ago
Dear community,
I plot fragment counts using RegionHeatmap. This is my code and the output is attached:
RM <- RegionMatrix( ATAC, range, key = 'key', assay = 'peaks', upstream = 3000, downstream = 3000 )
heatmap <- RegionHeatmap( RM, key = 'key', assay = 'peaks', normalize = TRUE, upstream = 3000, downstream = 3000, max.cutoff = "q95", cols = NULL, min.counts = 1, window = 6000/30, order = TRUE, nrow = 1 )
How can I change the order of identities? (Like 0,1,2,3,4,5,6,7,8, etc. instead of 0,1,10,11)
Thank you in advance for your help.
Dear community,
I plot fragment counts using RegionHeatmap. This is my code and the output is attached:
RM <- RegionMatrix( ATAC, range, key = 'key', assay = 'peaks', upstream = 3000, downstream = 3000 )
heatmap <- RegionHeatmap( RM, key = 'key', assay = 'peaks', normalize = TRUE, upstream = 3000, downstream = 3000, max.cutoff = "q95", cols = NULL, min.counts = 1, window = 6000/30, order = TRUE, nrow = 1 )
How can I change the order of identities? (Like 0,1,2,3,4,5,6,7,8, etc. instead of 0,1,10,11)
Thank you in advance for your help.