matthiaskoenig
commented
8 years ago Current discussion https://groups.google.com/forum/#!topic/cytoscape-app-dev/QpjgPR62ZK8
Closed stuppie closed 8 years ago
matthiaskoenig
commented
8 years ago Current discussion https://groups.google.com/forum/#!topic/cytoscape-app-dev/QpjgPR62ZK8
java.lang.VerifyError: (class: org/apache/xerces/impl/dv/xs/AbstractDateTimeDV, method: signature: ()V) Bad type in putfield/putstatic at org.apache.xerces.impl.dv.xs.XSSimpleTypeDecl.(Unknown Source) at org.apache.xerces.impl.dv.xs.SchemaDVFactoryImpl.createBuiltInTypes(Unknown Source) at org.apache.xerces.impl.dv.xs.SchemaDVFactoryImpl.(Unknown Source) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) at java.lang.reflect.Constructor.newInstance(Unknown Source) at java.lang.Class.newInstance(Unknown Source) at org.apache.xerces.impl.dv.ObjectFactory.newInstance(Unknown Source) at org.apache.xerces.impl.dv.SchemaDVFactory.getInstance(Unknown Source) at org.apache.xerces.impl.dv.SchemaDVFactory.getInstance(Unknown Source) at com.hp.hpl.jena.datatypes.xsd.XSDDatatype.(XSDDatatype.java:230) at com.hp.hpl.jena.datatypes.xsd.XSDDatatype.(XSDDatatype.java:242) at com.hp.hpl.jena.datatypes.xsd.impl.XSDFloat.(XSDFloat.java:49) at com.hp.hpl.jena.datatypes.xsd.XSDDatatype.(XSDDatatype.java:63) at com.hp.hpl.jena.sparql.expr.nodevalue.XSDFuncOp.(XSDFuncOp.java:766) at com.hp.hpl.jena.query.ARQ.setNormalMode(ARQ.java:381) at com.hp.hpl.jena.query.ARQ.defaultSettings(ARQ.java:463) at com.hp.hpl.jena.query.ARQ.init(ARQ.java:438) at com.hp.hpl.jena.query.ARQ.(ARQ.java:458) at org.apache.jena.riot.RIOT.(RIOT.java:38) at java.lang.Class.forName0(Native Method) at java.lang.Class.forName(Unknown Source) at com.hp.hpl.jena.rdf.model.impl.IO_Ctl.callByRefection(IO_Ctl.java:54) at com.hp.hpl.jena.rdf.model.impl.IO_Ctl.init(IO_Ctl.java:36) at com.hp.hpl.jena.rdf.model.impl.ModelCom.(ModelCom.java:65) at com.hp.hpl.jena.rdf.model.ModelFactory.createDefaultModel(ModelFactory.java:140) at org.cytoscape.vsdl3c.internal.SPARQLEndpointConfig.(SPARQLEndpointConfig.java:50) at org.cytoscape.vsdl3c.internal.CyActivator.start(CyActivator.java:75) at org.apache.felix.framework.util.SecureAction.startActivator(SecureAction.java:645) at org.apache.felix.framework.Felix.activateBundle(Felix.java:2146) at org.apache.felix.framework.Felix.startBundle(Felix.java:2064) at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:955) at org.apache.felix.fileinstall.internal.DirectoryWatcher.startBundle(DirectoryWatcher.java:1245) at org.apache.felix.fileinstall.internal.DirectoryWatcher.startBundles(DirectoryWatcher.java:1217) at org.apache.felix.fileinstall.internal.DirectoryWatcher.doProcess(DirectoryWatcher.java:509) at org.apache.felix.fileinstall.internal.DirectoryWatcher.process(DirectoryWatcher.java:358) at org.apache.felix.fileinstall.internal.DirectoryWatcher.run(DirectoryWatcher.java:310)
The workaround referenced here works: https://github.com/sgtp/SemScape/issues/6 Workaround: Remove the framework/lib/endorsed/xercesImpl-2.11.0.jar file from the Cytoscape installation. It does not seem to effect the Cytoscape application and now the SemScape app functions.