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stuppie / create_compil

Pipeline for creating compil database for gut microbiome metaproteomics

MIT License

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To do #2

Open stuppie opened 7 years ago

stuppie commented 7 years ago

Copied from bitbucket issues [https://bitbucket.org/sulab/metaproteomics/issues/1/changes-to-next-compil-version link]

Add integer ID to SeqDB records (so each peptide will have a unique int ID)
For every forward protein entry in protdb, add field linking to reverse's protdb ID
store sequence hashes and taxid in ProtDB
make use of gpff files