ips5rc4 combines identical sequences in tsv-output

[GoogleCodeExporter]

When annotating multiple identical sequences with different IDs, the domains 
hits are reported using concatenated (with "|") IDs.

Intuitively IPS should report them separately for each input ID.

See the attached files for a simple example.

Original issue reported on code.google.com by holgerbr...@gmail.com on 11 Mar 2013 at 1:12

Attachments:

• test.fasta
• test.fasta.tsv

[GoogleCodeExporter]

The problem extends also to multiple (more than 2) occurrences of the same 
sequence. In such cases the concatenated IDs in the output TSV  just gets 
longer. Example:
comp192256_c0_seq11_2_chunk10|comp192256_c0_seq21_3_chunk9|comp192256_c0_seq28_2
_chunk9|comp192256_c0_seq22_3_chunk9|comp192256_c0_seq2_3_chunk2|comp192256_c0_s
eq10_3_chunk2|comp192256_c0_seq6_2_chunk10

Original comment by holgerbr...@gmail.com on 11 Mar 2013 at 2:06

[GoogleCodeExporter]

Hi Holger,
There is a reason why decided to change that. I just have to remind myself and 
we will come back to you as soon as possible.
Thanks,
Maxim 

Original comment by Maxim.Sc...@gmail.com on 12 Mar 2013 at 10:37

[GoogleCodeExporter]

Hi Holger

We have changed the code now so that it behaves the way you suggested. The next 
interproscan release will report each ID separately.

Thanks,
Craig

Original comment by newboycr...@gmail.com on 21 Mar 2013 at 5:21

[GoogleCodeExporter]

Fixed.

Original comment by Maxim.Sc...@gmail.com on 26 Mar 2013 at 5:08

• Changed state: Fixed