search

stxmjh / interproscan

Automatically exported from code.google.com/p/interproscan
0 stars 0 forks source link

[interhelp #28142] Compiling BLAST 2.2.6 Debian #52

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Hello,

As I have observed in this thread, Issue 22, 
https://code.google.com/p/interproscan/issues/detail?id=22
I am having the blast failure occur during the PIRSF search.  The specific 
error is "executable not found at /bin/blast/2.2.6/blastall" 

of course there is an an executable at this location, it just doesn't work on 
my 64-bit Debian machine.  I tried finding source code for just this version of 
BLAST to recompile but I have had no luck.  I have downloaded other 
pre-compiled binaries for 64-bit machines that also do not work.  Instead I 
have only been able to find an old version of the NCBI toolkit in which blast 
2.2.6 is supposed to be bundled.  However, I am very leary of installing 12 
year old software in the hopes that it has the correct version of blast for 
PIRSF (it is hard to tell from the documentation).  Any suggestions?  Thanks.

Dan

Original issue reported on code.google.com by ddvander...@gmail.com on 30 Sep 2014 at 3:40

GoogleCodeExporter commented 9 years ago

Original comment by Mr.Matth...@gmail.com on 1 Oct 2014 at 2:13

GoogleCodeExporter commented 9 years ago 
Hi Dan,

Thank you for the email. There are some things you could try, documented in 
point #3 in our FAQ...

https://code.google.com/p/interproscan/wiki/FAQ#3.What_should_I_do_if_one_of_the
_binaries_included_with_InterProScan_5_doesn%27t_work_on_my_system?

...and the compiling binaries wiki page...

https://code.google.com/p/interproscan/wiki/CompilingBinaries

Hopefully those will fix your issues, let us know if not!

Thanks,

Matt
InterPro team

Original comment by Mr.Matth...@gmail.com on 1 Oct 2014 at 2:19