aarizvi
commented
2 years ago Low variance typically means that the standard deviation of that SNP is sd < 1e-04. We removed those SNPs because the model would not converge with them present.
Open DrGojiMori opened 3 years ago
aarizvi
commented
2 years ago Low variance typically means that the standard deviation of that SNP is sd < 1e-04. We removed those SNPs because the model would not converge with them present.
Hi!
The description says ".snps_removed extension containing SNPs that were removed due to low variance or user-defined thresholds." What is the definition of "low variance"? It seems that some SNPs are removed even though they meet the conditions I defined, and I think "low variance" is the reason.
Thank you for help!